Ss1.1-Ova1-OVRM10155E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGAGGTGCTTTGGGCGGGCCGGGGTTGCGGTGCTGTCCTCGAGTCTGGGCTCACCAG GCCCACAGCCTGGTAGCAATGAATCCCCCGCCTCCAGACCCCCTGGGCGACTGTCTGCGG GACTGGGAGGAGCTGCAGCAGGACTTCCAAGGCATCCAGGAGACCCACCGACTGTACCGC CTGAAGCTGGAAGAGCTGATCAAGCTGCAGAACAACTGTACCAGCTCCATCACCCGGCAG AAGAAGCGGCTCCAGGAGCTGGCCCTTGTCCTGAAGAAATGCAAACACTCCCTTCCATCC GAGGCTGAGGAGGCTGCGCAGGAGCTGGAAAGCCAAATCAAGGAGCGACAAGGCCTTTTC TTTGATATGGAGGCCTACTTACCCAAGAAGAATGGGTTGTACCTGAGCCTGGTTCTGGGC AACGTCAACGTGACACTCCTGAGCAAGCAGGCTAAGTTCGCCTACAAGGCCGAGTACGAG AAGTTCAAGCTCTACCTCACCATCATCCTCATCCTCGTCTCCTTCACCTGCCGCTTCCTC CTCAACTCCAGGGTGACCGACGCCGCCTTCAACTTCCTGCTGGTCTGGTATTACTGCACC CTGACCATCCGCGAGAGCATCCTCATCAACAACGGCTCCCGGATCAAAGGCTGGTGGGTT TTCCACCATTACGTGTCCACGTTCCTGTCGGGAGTCATGCTGACATGGCCCGACGGCCTC ATGTACCAGAAGTTCCGGAACCAGTTCCTGTCCTTCTCCATGTACCAGAGCTTTGTGCAG TTCCTCCAATATTACTACCAGAGCGGCTGTCTGTACCGCCTGCGGGCCCTGGGCGAGAGG CACACCATGGACCTGACCGTGGAGGGCTTCCAGTCCTGGATGTGGCGGGGCCTCACCTTC CTGCTGCCCTTCCTCTTCTTTGGACAGTTCTGGCAGCTTTTTAACGCACTGACGTTGTTC AGCCTGGCCCGGGACCCTGAGTGCAAGGAGTGGCAGGTGCTCATGTGCGGCCTCCCCTTC CTCCTCCTCTTCCTCGGCAATTTTTTCACCACCCTGCGGGTTGTACACCAGAAATTCCAC AACCAGCAGCACGGGGGCAAGAAAGATTGAGGCTGGGCGGGCCCAGCTCCCCACAACACC CCCGACCCGGAGGGGGCTTCTGTATCTCGTGTTGAGGGGTGGGGGCTCCCCTCATCCGGG GAGGTCTCGTCTGCTCTCCCTTGGGTTTTGCGGGCTCTGTCGGCCCTGAAGGCGGCGCTG GAGAGGAAGACCTGGGCCTGTGTCCCCGCCCTGCAGGGAGGTGGGACAGCAGCCTCAATA AAGGACCGGAGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGAGGTGCTTTGGGCGGGCCGGGGTTGCGGTGCTGTCCTCGAGTCTGGGCTCACCAG GCCCACAGCCTGGTAGCAATGAATCCCCCGCCTCCAGACCCCCTGGGCGACTGTCTGCGG GACTGGGAGGAGCTGCAGCAGGACTTCCAAGGCATCCAGGAGACCCACCGACTGTACCGC CTGAAGCTGGAAGAGCTGATCAAGCTGCAGAACAACTGTACCAGCTCCATCACCCGGCAG AAGAAGCGGCTCCAGGAGCTGGCCCTTGTCCTGAAGAAATGCAAACACTCCCTTCCATCC GAGGCTGAGGAGGCTGCGCAGGAGCTGGAAAGCCAAATCAAGGAGCGACAAGGCCTTTTC TTTGATATGGAGGCCTACTTACCCAAGAAGAATGGGTTGTACCTGAGCCTGGTTCTGGGC AACGTCAACGTGACACTCCTGAGCAAGCAGGCTAAGTTCGCCTACAAGGCCGAGTACGAG AAGTTCAAGCTCTACCTCACCATCATCCTCATCCTCGTCTCCTTCACCTGCCGCTTCCTC CTCAACTCCAGGGTGACCGACGCCGCCTTCAACTTCCTGCTGGTCTGGTATTACTGCACC CTGACCATCCGCGAGAGCATCCTCATCAACAACGGCTCCCGGATCAAAGGCTGGTGGGTT TTCCACCATTACGTGTCCACGTTCCTGTCGGGAGTCATGCTGACATGGCCCGACGGCCTC ATGTACCAGAAGTTCCGGAACCAGTTCCTGTCCTTCTCCATGTACCAGAGCTTTGTGCAG TTCCTCCAATATTACTACCAGAGCGGCTGTCTGTACCGCCTGCGGGCCCTGGGCGAGAGG CACACCATGGACCTGACCGTGGAGGGCTTCCAGTCCTGGATGTGGCGGGGCCTCACCTTC CTGCTGCCCTTCCTCTTCTTTGGACAGTTCTGGCAGCTTTTTAACGCACTGACGTTGTTC AGCCTGGCCCGGGACCCTGAGTGCAAGGAGTGGCAGGTGCTCATGTGCGGCCTCCCCTTC CTCCTCCTCTTCCTCGGCAATTTTTTCACCACCCTGCGGGTTGTACACCAGAAATTCCAC AACCAGCAGCACGGGGGCAAGAAAGATTGAGGCTGGGCGGGCCCAGCTCCCCACAACACC CCCGACCCGGAGGGGGCTTCTGTATCTCGTGTTGAGGGGTGGGGGCTCCCCTCATCCGGG GAGGTCTCGTCTGCTCTCCCTTGGGTTTTGCGGGCTCTGTCGGCCCTGAAGGCGGCGCTG GAGAGGAAGACCTGGGCCTGTGTCCCCGCCCTGCAGGGAGGTGGGACAGCAGCCTCAATA AAGGACCGGAGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1175-1293, - strand, RNAz p=0.944821 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1175-1293, - strand, RNAz p=0.944821 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr25 (31542756-31542916) | |
| 1-163, gnl|Hg17|chr7 (75268599-75268455) | |
| 1-163, gnl|Mm7|chr5 (134715487-134715324) | |
| 279-397, gnl|bosTau2|chr25 (31544904-31545022) | |
| 279-397, gnl|canFam2|chr6 (10321436-10321532) | |
| 279-397, gnl|danRer3|chr10 (32608281-32608222) | |
| 279-397, gnl|dasNov1|scaffold_107997 (5501-5405) | |
| 279-397, gnl|echTel1|scaffold_276013 (2032-2128) | |
| 279-397, gnl|fr1|chrUn (7857534-7857630) | |
| 279-397, gnl|galGal2|chr19 (4032941-4032852) | |
| 279-397, gnl|hg17|chr7 (75266113-75266209) | |
| 279-397, gnl|Hg17|chr7 (75266229-75266111) | |
| 279-397, gnl|loxAfr1|scaffold_18542 (19413-19316) | |
| 279-397, gnl|mm7|chr5 (134713246-134713342) | |
| 279-397, gnl|Mm7|chr5 (134713362-134713244) | |
| 279-397, gnl|oryCun1|scaffold_168960 (226-123) | |
| 279-397, gnl|panTro1|chr6 (76361107-76361203) | |
| 279-397, gnl|rheMac2|chr3 (50282263-50282167) | |
| 279-397, gnl|rn3|chr12 (22059574-22059478) | |
| 279-397, gnl|tetNig1|chrUn_random (29327299-29327212) | |
| 508-638, gnl|bosTau2|chr17 (28343226-28343098) | |
| 508-638, gnl|Hg17|chr12 (120662234-120662361) | |
| 508-638, gnl|Mm7|chr5 (122334923-122335041) | |
| 1139-1357, gnl|bosTau2|chr18 (55359693-55359913) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr25 (31542756-31542916) | |
| 1-163, gnl|Hg17|chr7 (75268599-75268455) | |
| 1-163, gnl|Mm7|chr5 (134715487-134715324) | |
| 279-397, gnl|bosTau2|chr25 (31544904-31545022) | |
| 279-397, gnl|canFam2|chr6 (10321436-10321532) | |
| 279-397, gnl|danRer3|chr10 (32608281-32608222) | |
| 279-397, gnl|dasNov1|scaffold_107997 (5501-5405) | |
| 279-397, gnl|echTel1|scaffold_276013 (2032-2128) | |
| 279-397, gnl|fr1|chrUn (7857534-7857630) | |
| 279-397, gnl|galGal2|chr19 (4032941-4032852) | |
| 279-397, gnl|hg17|chr7 (75266113-75266209) | |
| 279-397, gnl|Hg17|chr7 (75266229-75266111) | |
| 279-397, gnl|loxAfr1|scaffold_18542 (19413-19316) | |
| 279-397, gnl|mm7|chr5 (134713246-134713342) | |
| 279-397, gnl|Mm7|chr5 (134713362-134713244) | |
| 279-397, gnl|oryCun1|scaffold_168960 (226-123) | |
| 279-397, gnl|panTro1|chr6 (76361107-76361203) | |
| 279-397, gnl|rheMac2|chr3 (50282263-50282167) | |
| 279-397, gnl|rn3|chr12 (22059574-22059478) | |
| 279-397, gnl|tetNig1|chrUn_random (29327299-29327212) | |
| 508-638, gnl|bosTau2|chr17 (28343226-28343098) | |
| 508-638, gnl|Hg17|chr12 (120662234-120662361) | |
| 508-638, gnl|Mm7|chr5 (122334923-122335041) | |
| 1139-1357, gnl|bosTau2|chr18 (55359693-55359913) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| jej (0.296765) | |
| fce (0.271592) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| hyp (0.142837) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| jej (0.296765) | |
| fce (0.271592) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| nco (0.161734) | |
| hyp (0.142837) |