Ss1.1-Ova1-OVRM10158D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACTGGCGGCTCTCAGCCCTGGCTCCGCGCCCCCTGCAGCAATGGCCTGGAACACCAAT CTCCGCTGGCGGCTGCCGCTCACCTGCCTCCTCCTGCAGGTGATTATGGTGATCCTCTTC GGCGTGTTTGTGCGCTACGACCCGGATGCGGACGCCCACTGGATTGAGGAGAGGTTGGGC AGGAACATCTCCAGCGACATGGACAACGAATTCTACTATCGCTACCCCAGCTTCCAGGAC GTGCACGTGATGATCTTCGTGGGCTTCGGCTTCCTCATGACCTTCCTTCAGCGCTACGGC TTCAGCTCTGTGGGCTTCAACTTCCTGCTGGCGGCCTTTGGCATCCAGTGGGCGCTACTT ATGCAGGGTTGGCTGCACTCCTCTCACAGCGGCTACATTGTCCTGGGCGTGGAGAACCTC ATCAACGCGGACTTCTGCGTGGGCTCTGTCTGTGTGGCCTTTGGGGCGGTCCTGGGCAAA GTCAGCCCTGTTCAGCTCCTCATCATGACCCTCTTCCAAGTGACCCTCTTCTCAGTGAAT GAGTTCATTCTTCTCAACCTGCTGGAGGTGAAGGATGCAGGGGGCTCCATGACCATCCAC ACATTCGGCGCCTACTTTGGGCTCACAGTGACCTGGATCCTCTACCGACCCAACCTGTAC CAGAGCAAGGAGAGGCAAAGTTCTGTGTACCACTCGGACCTCTTTGCCATGATCGGCACC CTCTTCCTGTGGATGTACTGGCCCAGCTTCAACTCAGCTGTGTCCCATCACGGCGATGCC CAACATCGAGCTGCCATCAACACCTACTGTTCCTTGGCAGCCTGTGTGCTCACTTCGGTG GCGCTGTCCAGTGCTCTGCATAAGAAAGGCAAGCTGGACATGGTGCACATCCAGAATGCC ACGCTCGCGGGAGGGGTGGCCTGTGGGCACGGCCGCCGAGATGATGCTCATGCCTTATGG CTCCCTCATCGTTGGCTTCATCTGCGGCATCATCTCCACCCTGGGCTTTGTGTACCTGAC GCCCTTCCTGGAGTCCCGGCTGCGGATCCAGGACACATGTGGCATTCACAACCTACACGG CATGCCCGGCATCATAGGCGGCATCGTGGGGGCCGTAACAGCGGCCTCTGCAAACACTCA GCAGTATGGGCAGAAGGGGCTTGCCCATGCCTTTGACATTGATGCTACCAAGACAACTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACTGGCGGCTCTCAGCCCTGGCTCCGCGCCCCCTGCAGCAATGGCCTGGAACACCAAT CTCCGCTGGCGGCTGCCGCTCACCTGCCTCCTCCTGCAGGTGATTATGGTGATCCTCTTC GGCGTGTTTGTGCGCTACGACCCGGATGCGGACGCCCACTGGATTGAGGAGAGGTTGGGC AGGAACATCTCCAGCGACATGGACAACGAATTCTACTATCGCTACCCCAGCTTCCAGGAC GTGCACGTGATGATCTTCGTGGGCTTCGGCTTCCTCATGACCTTCCTTCAGCGCTACGGC TTCAGCTCTGTGGGCTTCAACTTCCTGCTGGCGGCCTTTGGCATCCAGTGGGCGCTACTT ATGCAGGGTTGGCTGCACTCCTCTCACAGCGGCTACATTGTCCTGGGCGTGGAGAACCTC ATCAACGCGGACTTCTGCGTGGGCTCTGTCTGTGTGGCCTTTGGGGCGGTCCTGGGCAAA GTCAGCCCTGTTCAGCTCCTCATCATGACCCTCTTCCAAGTGACCCTCTTCTCAGTGAAT GAGTTCATTCTTCTCAACCTGCTGGAGGTGAAGGATGCAGGGGGCTCCATGACCATCCAC ACATTCGGCGCCTACTTTGGGCTCACAGTGACCTGGATCCTCTACCGACCCAACCTGTAC CAGAGCAAGGAGAGGCAAAGTTCTGTGTACCACTCGGACCTCTTTGCCATGATCGGCACC CTCTTCCTGTGGATGTACTGGCCCAGCTTCAACTCAGCTGTGTCCCATCACGGCGATGCC CAACATCGAGCTGCCATCAACACCTACTGTTCCTTGGCAGCCTGTGTGCTCACTTCGGTG GCGCTGTCCAGTGCTCTGCATAAGAAAGGCAAGCTGGACATGGTGCACATCCAGAATGCC ACGCTCGCGGGAGGGGTGGCCTGTGGGCACGGCCGCCGAGATGATGCTCATGCCTTATGG CTCCCTCATCGTTGGCTTCATCTGCGGCATCATCTCCACCCTGGGCTTTGTGTACCTGAC GCCCTTCCTGGAGTCCCGGCTGCGGATCCAGGACACATGTGGCATTCACAACCTACACGG CATGCCCGGCATCATAGGCGGCATCGTGGGGGCCGTAACAGCGGCCTCTGCAAACACTCA GCAGTATGGGCAGAAGGGGCTTGCCCATGCCTTTGACATTGATGCTACCAAGACAACTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 718-837, - strand, RNAz p=0.523654 | |
| 719-837, - strand, RNAz p=0.6924 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 718-837, - strand, RNAz p=0.523654 | |
| 719-837, - strand, RNAz p=0.6924 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 2-230, gnl|bosTau2|chr21 (15721411-15721638) | |
| 2-230, gnl|Hg17|chr15 (87840817-87840595) | |
| 2-230, gnl|Mm7|chr7 (75485848-75485630) | |
| 417-571, gnl|bosTau2|chr21 (15733314-15733468) | |
| 417-571, gnl|canFam2|chr3 (55375771-55375966) | |
| 417-571, gnl|danRer3|chr7 (4236197-4236358) | |
| 417-571, gnl|echTel1|scaffold_324548 (42705-42516) | |
| 417-571, gnl|fr1|chrUn (166069720-166069915) | |
| 417-571, gnl|galGal2|chr10 (13449346-13449167) | |
| 417-571, gnl|hg17|chr15 (87827289-87827484) | |
| 417-571, gnl|Hg17|chr15 (87827452-87827298) | |
| 417-571, gnl|loxAfr1|scaffold_217762 (810-999) | |
| 417-571, gnl|mm7|chr7 (75472018-75472212) | |
| 417-571, gnl|Mm7|chr7 (75472181-75472027) | |
| 417-571, gnl|monDom2|scaffold_45 (10971227-10971031) | |
| 417-571, gnl|oryCun1|scaffold_197961 (17319-17499) | |
| 417-571, gnl|panTro1|chr16 (88701150-88701345) | |
| 417-571, gnl|rheMac2|chr7 (69110058-69110253) | |
| 417-571, gnl|rn3|chr1 (135451146-135451340) | |
| 417-571, gnl|tetNig1|chr13 (5035387-5035541) | |
| 417-571, gnl|xenTro1|scaffold_130 (1202007-1202184) | |
| 681-885, gnl|bosTau2|chr21 (15737688-15737891) | |
| 681-885, gnl|canFam2|chr3 (55371193-55371373) | |
| 681-885, gnl|danRer3|chr7 (4234578-4234752) | |
| 681-885, gnl|dasNov1|scaffold_4075 (131860-132032) | |
| 681-885, gnl|echTel1|scaffold_324548 (45337-45156) | |
| 681-885, gnl|fr1|chrUn (166069192-166069369) | |
| 681-885, gnl|galGal2|chr10 (13450199-13450019) | |
| 681-885, gnl|hg17|chr15 (87823553-87823733) | |
| 681-885, gnl|Hg17|chr15 (87823757-87823554) | |
| 681-885, gnl|loxAfr1|scaffold_38930 (7430-7608) | |
| 681-885, gnl|mm7|chr7 (75468781-75468962) | |
| 681-885, gnl|Mm7|chr7 (75468987-75468782) | |
| 681-885, gnl|monDom2|scaffold_45 (10972390-10972214) | |
| 681-885, gnl|oryCun1|scaffold_197961 (13466-13647) | |
| 681-885, gnl|panTro1|chr16 (88697423-88697603) | |
| 681-885, gnl|rheMac2|chr4 (49325757-49325939) | |
| 681-885, gnl|rn3|chr1 (135448279-135448460) | |
| 681-885, gnl|tetNig1|chr13 (5034854-5035033) | |
| 681-885, gnl|xenTro1|scaffold_130 (1197757-1197931) | |
| 1021-1158, gnl|bosTau2|chr21 (15739721-15739859) | |
| 1021-1158, gnl|canFam2|chr3 (55369200-55369362) | |
| 1021-1158, gnl|danRer3|chr7 (4232721-4232863) | |
| 1021-1158, gnl|dasNov1|scaffold_100756 (9264-9425) | |
| 1021-1158, gnl|echTel1|scaffold_324548 (50222-50059) | |
| 1021-1158, gnl|fr1|chrUn (166068755-166068897) | |
| 1021-1158, gnl|galGal2|chr10 (13451523-13451364) | |
| 1021-1158, gnl|hg17|chr15 (87821744-87821906) | |
| 1021-1158, gnl|Hg17|chr15 (87821889-87821751) | |
| 1021-1158, gnl|loxAfr1|scaffold_97509 (4530-4368) | |
| 1021-1158, gnl|mm7|chr7 (75467640-75467806) | |
| 1021-1158, gnl|Mm7|chr7 (75467785-75467647) | |
| 1021-1158, gnl|monDom2|scaffold_45 (10975118-10974950) | |
| 1021-1158, gnl|oryCun1|scaffold_197961 (12097-12253) | |
| 1021-1158, gnl|panTro1|chr16 (88695560-88695722) | |
| 1021-1158, gnl|rheMac2|chr7 (69104489-69104651) | |
| 1021-1158, gnl|rn3|chr1 (135447080-135447246) | |
| 1021-1158, gnl|tetNig1|chr13 (5034422-5034581) | |
| 1021-1158, gnl|xenTro1|scaffold_130 (1193899-1194048) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-230, gnl|bosTau2|chr21 (15721411-15721638) | |
| 2-230, gnl|Hg17|chr15 (87840817-87840595) | |
| 2-230, gnl|Mm7|chr7 (75485848-75485630) | |
| 417-571, gnl|bosTau2|chr21 (15733314-15733468) | |
| 417-571, gnl|canFam2|chr3 (55375771-55375966) | |
| 417-571, gnl|danRer3|chr7 (4236197-4236358) | |
| 417-571, gnl|echTel1|scaffold_324548 (42705-42516) | |
| 417-571, gnl|fr1|chrUn (166069720-166069915) | |
| 417-571, gnl|galGal2|chr10 (13449346-13449167) | |
| 417-571, gnl|hg17|chr15 (87827289-87827484) | |
| 417-571, gnl|Hg17|chr15 (87827452-87827298) | |
| 417-571, gnl|loxAfr1|scaffold_217762 (810-999) | |
| 417-571, gnl|mm7|chr7 (75472018-75472212) | |
| 417-571, gnl|Mm7|chr7 (75472181-75472027) | |
| 417-571, gnl|monDom2|scaffold_45 (10971227-10971031) | |
| 417-571, gnl|oryCun1|scaffold_197961 (17319-17499) | |
| 417-571, gnl|panTro1|chr16 (88701150-88701345) | |
| 417-571, gnl|rheMac2|chr7 (69110058-69110253) | |
| 417-571, gnl|rn3|chr1 (135451146-135451340) | |
| 417-571, gnl|tetNig1|chr13 (5035387-5035541) | |
| 417-571, gnl|xenTro1|scaffold_130 (1202007-1202184) | |
| 681-885, gnl|bosTau2|chr21 (15737688-15737891) | |
| 681-885, gnl|canFam2|chr3 (55371193-55371373) | |
| 681-885, gnl|danRer3|chr7 (4234578-4234752) | |
| 681-885, gnl|dasNov1|scaffold_4075 (131860-132032) | |
| 681-885, gnl|echTel1|scaffold_324548 (45337-45156) | |
| 681-885, gnl|fr1|chrUn (166069192-166069369) | |
| 681-885, gnl|galGal2|chr10 (13450199-13450019) | |
| 681-885, gnl|hg17|chr15 (87823553-87823733) | |
| 681-885, gnl|Hg17|chr15 (87823757-87823554) | |
| 681-885, gnl|loxAfr1|scaffold_38930 (7430-7608) | |
| 681-885, gnl|mm7|chr7 (75468781-75468962) | |
| 681-885, gnl|Mm7|chr7 (75468987-75468782) | |
| 681-885, gnl|monDom2|scaffold_45 (10972390-10972214) | |
| 681-885, gnl|oryCun1|scaffold_197961 (13466-13647) | |
| 681-885, gnl|panTro1|chr16 (88697423-88697603) | |
| 681-885, gnl|rheMac2|chr4 (49325757-49325939) | |
| 681-885, gnl|rn3|chr1 (135448279-135448460) | |
| 681-885, gnl|tetNig1|chr13 (5034854-5035033) | |
| 681-885, gnl|xenTro1|scaffold_130 (1197757-1197931) | |
| 1021-1158, gnl|bosTau2|chr21 (15739721-15739859) | |
| 1021-1158, gnl|canFam2|chr3 (55369200-55369362) | |
| 1021-1158, gnl|danRer3|chr7 (4232721-4232863) | |
| 1021-1158, gnl|dasNov1|scaffold_100756 (9264-9425) | |
| 1021-1158, gnl|echTel1|scaffold_324548 (50222-50059) | |
| 1021-1158, gnl|fr1|chrUn (166068755-166068897) | |
| 1021-1158, gnl|galGal2|chr10 (13451523-13451364) | |
| 1021-1158, gnl|hg17|chr15 (87821744-87821906) | |
| 1021-1158, gnl|Hg17|chr15 (87821889-87821751) | |
| 1021-1158, gnl|loxAfr1|scaffold_97509 (4530-4368) | |
| 1021-1158, gnl|mm7|chr7 (75467640-75467806) | |
| 1021-1158, gnl|Mm7|chr7 (75467785-75467647) | |
| 1021-1158, gnl|monDom2|scaffold_45 (10975118-10974950) | |
| 1021-1158, gnl|oryCun1|scaffold_197961 (12097-12253) | |
| 1021-1158, gnl|panTro1|chr16 (88695560-88695722) | |
| 1021-1158, gnl|rheMac2|chr7 (69104489-69104651) | |
| 1021-1158, gnl|rn3|chr1 (135447080-135447246) | |
| 1021-1158, gnl|tetNig1|chr13 (5034422-5034581) | |
| 1021-1158, gnl|xenTro1|scaffold_130 (1193899-1194048) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |