Non-Coding RNA Search

Ss1.1-Ova1-OVRM10159D02.5

Sequence:


               
               GGGGTTGGGTTGGTGTGTTTTCTCTCACCTCCCTTTGACGAGGGTCCTCTTTTCCCATCT
TCCTTCAAGCCTCACAGAGGGGGCTTGCATAGGAGTGCAGACTGAAGGCATCAGAGGAAG
GACTGGCTGAGGGGCTGTCCTCTGATGGGAGTTTGGGGACATACTTGGTCTTGTCCTCTC
CCGCACAGCACAGGTTCCAGCACTGGCTTTGGAAGAAAAAAATACCCCTGTTTACTTCTG
GTGCCTGCATTGCAGCTGACGATTCTGTGACTCCTGGGCACCAGCTGGGAAGAGACCTTC
CTGGGGATGAGCTTTTCTCCTCCATATACTGCCTTCAGTAGGAGGTTCTGATCTCTAAGA
ATATGGAGGACATAGGAGGCAGATAGAAAATTGCTCCTTGTACAGTTCTGCAAACTGCTG
GACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCGGTTGCTGG
TGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGTGCTCTTCG
GCCTCGCCCTCTACCTGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAGCCTTCGAG
TAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTACATGAGCC
AGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTGGCTAAATA
AGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTTGGCTGAAA
CTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATTTACACGAG
TGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGGTCAGAGAA
AAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGATTGATGTGG
AAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGGTGTCTTAC
GGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTCGATGTTCT
TTATCCGGCGGCCGACCCTAGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTTGGGTTGGTGTGTTTTCTCTCACCTCCCTTTGACGAGGGTCCTCTTTTCCCATCT
TCCTTCAAGCCTCACAGAGGGGGCTTGCATAGGAGTGCAGACTGAAGGCATCAGAGGAAG
GACTGGCTGAGGGGCTGTCCTCTGATGGGAGTTTGGGGACATACTTGGTCTTGTCCTCTC
CCGCACAGCACAGGTTCCAGCACTGGCTTTGGAAGAAAAAAATACCCCTGTTTACTTCTG
GTGCCTGCATTGCAGCTGACGATTCTGTGACTCCTGGGCACCAGCTGGGAAGAGACCTTC
CTGGGGATGAGCTTTTCTCCTCCATATACTGCCTTCAGTAGGAGGTTCTGATCTCTAAGA
ATATGGAGGACATAGGAGGCAGATAGAAAATTGCTCCTTGTACAGTTCTGCAAACTGCTG
GACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCGGTTGCTGG
TGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGTGCTCTTCG
GCCTCGCCCTCTACCTGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAGCCTTCGAG
TAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTACATGAGCC
AGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTGGCTAAATA
AGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTTGGCTGAAA
CTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATTTACACGAG
TGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGGTCAGAGAA
AAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGATTGATGTGG
AAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGGTGTCTTAC
GGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTCGATGTTCT
TTATCCGGCGGCCGACCCTAGATA

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-227, gnl|bosTau2|chr5 (33494589-33494363)
               

               
               1-227, gnl|canFam2|chr10 (3424125-3424628)
               

               
               1-227, gnl|echTel1|scaffold_221514 (1320-876)
               

               
               1-227, gnl|hg17|chr12 (54801934-54802431)
               

               
               1-227, gnl|Hg17|chr12 (54802063-54802290)
               

               
               1-227, gnl|loxAfr1|scaffold_13800 (32671-33176)
               

               
               1-227, gnl|mm7|chr10 (128045933-128045449)
               

               
               1-227, gnl|Mm7|chr10 (128045784-128045573)
               

               
               1-227, gnl|panTro1|chr10 (56050116-56050613)
               

               
               1-227, gnl|rheMac2|chr11 (53178668-53179165)
               

               
               1-227, gnl|rn3|chr7 (1836069-1835587)
               


               
               411-686, gnl|bosTau2|chr5 (33488993-33488718)
               

               
               411-686, gnl|Hg17|chr12 (54808491-54808766)
               

               
               411-686, gnl|Mm7|chr10 (128027501-128027226)
               


               
               721-862, gnl|bosTau2|chr5 (33486904-33486763)
               

               
               721-862, gnl|Hg17|chr12 (54810840-54810981)
               

               
               721-862, gnl|Mm7|chr10 (128024325-128024184)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr5 (33494589-33494363)
               

               
               1-227, gnl|canFam2|chr10 (3424125-3424628)
               

               
               1-227, gnl|echTel1|scaffold_221514 (1320-876)
               

               
               1-227, gnl|hg17|chr12 (54801934-54802431)
               

               
               1-227, gnl|Hg17|chr12 (54802063-54802290)
               

               
               1-227, gnl|loxAfr1|scaffold_13800 (32671-33176)
               

               
               1-227, gnl|mm7|chr10 (128045933-128045449)
               

               
               1-227, gnl|Mm7|chr10 (128045784-128045573)
               

               
               1-227, gnl|panTro1|chr10 (56050116-56050613)
               

               
               1-227, gnl|rheMac2|chr11 (53178668-53179165)
               

               
               1-227, gnl|rn3|chr7 (1836069-1835587)
               


               
               411-686, gnl|bosTau2|chr5 (33488993-33488718)
               

               
               411-686, gnl|Hg17|chr12 (54808491-54808766)
               

               
               411-686, gnl|Mm7|chr10 (128027501-128027226)
               


               
               721-862, gnl|bosTau2|chr5 (33486904-33486763)
               

               
               721-862, gnl|Hg17|chr12 (54810840-54810981)
               

               
               721-862, gnl|Mm7|chr10 (128024325-128024184)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-227, gnl\|bosTau2\|chr5 (33494589-33494363)
	1-227, gnl\|canFam2\|chr10 (3424125-3424628)
	1-227, gnl\|echTel1\|scaffold_221514 (1320-876)
	1-227, gnl\|hg17\|chr12 (54801934-54802431)
	1-227, gnl\|Hg17\|chr12 (54802063-54802290)
	1-227, gnl\|loxAfr1\|scaffold_13800 (32671-33176)
	1-227, gnl\|mm7\|chr10 (128045933-128045449)
	1-227, gnl\|Mm7\|chr10 (128045784-128045573)
	1-227, gnl\|panTro1\|chr10 (56050116-56050613)
	1-227, gnl\|rheMac2\|chr11 (53178668-53179165)
	1-227, gnl\|rn3\|chr7 (1836069-1835587)

	411-686, gnl\|bosTau2\|chr5 (33488993-33488718)
	411-686, gnl\|Hg17\|chr12 (54808491-54808766)
	411-686, gnl\|Mm7\|chr10 (128027501-128027226)

	721-862, gnl\|bosTau2\|chr5 (33486904-33486763)
	721-862, gnl\|Hg17\|chr12 (54810840-54810981)
	721-862, gnl\|Mm7\|chr10 (128024325-128024184)