Non-Coding RNA Search

Ss1.1-Ova1-OVRM10159H07.5

Sequence:


               
               ATTTATAACCCCTCTGGGAACGTTTGTCTGAAGGAAATGTTTCCGTTCAGTGCAACAATT
ACGGTTGCACCTGGATTGCCCAGTCCTGCCCCTGCCCTTGGGAGCCGTTCATCACCGCAA
AGTGGAAGAATTATTAAGTTAAACCAGAGTTTGAGCCAAGAAAACCTCTGAACGATGTTC
ATCCTCTGTGAAAGCTGTTCAAACAGTTAGGCTTAACCATGTTGCTGCCAATGACTTTTT
CCCGAGCCATGGTGGGCATCTCGAACATCATCATTCTCTTTATTGGTTAAAAACATGCAG
TTTGAAGCACGCACCACTGTCATCGGAGACCAGCAGTTCGGGGGAAGAGGGGAAACTGGC
GAGATGTAGAATCAGAACAAGCAGGAAGATGAGCGCATTGCAGGGTGGAAAGTTCAGCAG
CAGTCGTTTCTGGTCGTTTCTTTCCGCAGGACCTGTTGTTTATGGGCTGTGTGGGAAACA
CACGGCTTTGCGGTAGAAGCCACAGAAAGCATGAACTAGGGTGTCCATTTTAAATGTGTT
CCTGCAACTTTTTTCATTAAAACTTTGAGGGCCCAATTTTAATTTGTGGAATATTCCCGT
TAATAATGAGATCTAATTAAGACATCCATTAAAAGCCCGTTAAAGTTAATTTAACGTAAA
AATTCCAATAGAACTGTATTAGATTTTGTCCATTAAATTAACGTTATGGATTTTTAACGG
ATGTCTTAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATAACCCCTCTGGGAACGTTTGTCTGAAGGAAATGTTTCCGTTCAGTGCAACAATT
ACGGTTGCACCTGGATTGCCCAGTCCTGCCCCTGCCCTTGGGAGCCGTTCATCACCGCAA
AGTGGAAGAATTATTAAGTTAAACCAGAGTTTGAGCCAAGAAAACCTCTGAACGATGTTC
ATCCTCTGTGAAAGCTGTTCAAACAGTTAGGCTTAACCATGTTGCTGCCAATGACTTTTT
CCCGAGCCATGGTGGGCATCTCGAACATCATCATTCTCTTTATTGGTTAAAAACATGCAG
TTTGAAGCACGCACCACTGTCATCGGAGACCAGCAGTTCGGGGGAAGAGGGGAAACTGGC
GAGATGTAGAATCAGAACAAGCAGGAAGATGAGCGCATTGCAGGGTGGAAAGTTCAGCAG
CAGTCGTTTCTGGTCGTTTCTTTCCGCAGGACCTGTTGTTTATGGGCTGTGTGGGAAACA
CACGGCTTTGCGGTAGAAGCCACAGAAAGCATGAACTAGGGTGTCCATTTTAAATGTGTT
CCTGCAACTTTTTTCATTAAAACTTTGAGGGCCCAATTTTAATTTGTGGAATATTCCCGT
TAATAATGAGATCTAATTAAGACATCCATTAAAAGCCCGTTAAAGTTAATTTAACGTAAA
AATTCCAATAGAACTGTATTAGATTTTGTCCATTAAATTAACGTTATGGATTTTTAACGG
ATGTCTTAATTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               595-732, + strand, RNAz p=0.926296

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               595-732, + strand, RNAz p=0.926296

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               633-734, - strand, RNAmicro p=0.999607
               

               
               620-736, + strand, RNAmicro p=0.995049

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               633-734, - strand, RNAmicro p=0.999607
               

               
               620-736, + strand, RNAmicro p=0.995049

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr13 (62136499-62137219)
               

               
               1-732, gnl|Hg17|chr20 (51537562-51538280)
               

               
               1-732, gnl|Mm7|chr2 (169863427-169864110)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr13 (62136499-62137219)
               

               
               1-732, gnl|Hg17|chr20 (51537562-51538280)
               

               
               1-732, gnl|Mm7|chr2 (169863427-169864110)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	633-734, - strand, RNAmicro p=0.999607
	620-736, + strand, RNAmicro p=0.995049

	1-732, gnl\|bosTau2\|chr13 (62136499-62137219)
	1-732, gnl\|Hg17\|chr20 (51537562-51538280)
	1-732, gnl\|Mm7\|chr2 (169863427-169864110)