Non-Coding RNA Search

Ss1.1-Ova1-OVRM10160A11.5

Sequence:


               
               GCTCCTCATTTCAGTTCCAAAGCGAGAGCGAAACGGGAAATGACTTTCTATCTGGCGCAT
CTCTCAGGACCTCCTTCCGGTTAGCCTTGGGGAGTACGCGTGAGAGTTGGAAATTTCGTG
GAGCCAGTGCTGGGAGGTGCTAGTCGGCTACCCCTTGTTCGAGACGTGTCCCGGCTGTGG
GACTAAAATGTCGGACACGTGGAGCTCTATCCAGGCCCACAAAAAGCAGCTGGACTCGCT
GAGGGAAAGGCTGCGGCGGAGGCGGAAGCAGGACTCAGGGCACTTGGATCTTCGGAATCC
AGAGGCAGCACTGTCTCCAACCTTCCGTAGTGACAGCCCAGTGCCTACTGTACCCACTTC
TGGTGGCCCTAAGCCCAGCACAGCTTCAGCAGTTCCTGAGCTAGCTACAGACCCTGAATT
AGAGAAGAAGTTGCTACACCACCTTTCTGATCTGGCGCTAACATTGCCCACTGATGCTGT
CTCCATCCGTCTTGCCATCTCCACGCCAGATGCCCCTGCCACTCAGGATGGAGTGGAAAG
CCTCTTACAGAAGTTTGCAGCTCAGGAGTTGATTGAAGTAAAGCGAAGTCTCCTACAAGA
TGATGCACACCCTACTCTTGTGACCTATGCTGATCATTCCAAGCTCTCTGCCATGATGGG
TGCTGTGGCAGAAAAGAAGGGCCCTGGGGAGGTAGCCGGGACCATCACAGGGCAGAAGAG
GCGTGCAGAACAGGACTCGACCACAGTAGCTGCCTTTGCAAGCTCTCTGACCTCTGGTCT
GGCCTCTTCAGCATCAGAAGTAGCCAAGGAGCCAACCAAGAAATCAAGGAAACATGCTGC
CTCAGATGTTGACCTGGAGATAGAGAGCCTTCTGAACCAACAATCTACTAAGGAACAACA
GAGCAAGAAGGTTAGTCAAGAGATCCTAGAACTATTAAATACTACAACAGCCAAGGAACA
ATCCATTGTTGAAAAGTTTCGTTCACGAGGTCGGGCTCAAGTGCAAGAATTCTGTGACTA
TGGAACCAAGGAGGAGTGCATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTCATTTCAGTTCCAAAGCGAGAGCGAAACGGGAAATGACTTTCTATCTGGCGCAT
CTCTCAGGACCTCCTTCCGGTTAGCCTTGGGGAGTACGCGTGAGAGTTGGAAATTTCGTG
GAGCCAGTGCTGGGAGGTGCTAGTCGGCTACCCCTTGTTCGAGACGTGTCCCGGCTGTGG
GACTAAAATGTCGGACACGTGGAGCTCTATCCAGGCCCACAAAAAGCAGCTGGACTCGCT
GAGGGAAAGGCTGCGGCGGAGGCGGAAGCAGGACTCAGGGCACTTGGATCTTCGGAATCC
AGAGGCAGCACTGTCTCCAACCTTCCGTAGTGACAGCCCAGTGCCTACTGTACCCACTTC
TGGTGGCCCTAAGCCCAGCACAGCTTCAGCAGTTCCTGAGCTAGCTACAGACCCTGAATT
AGAGAAGAAGTTGCTACACCACCTTTCTGATCTGGCGCTAACATTGCCCACTGATGCTGT
CTCCATCCGTCTTGCCATCTCCACGCCAGATGCCCCTGCCACTCAGGATGGAGTGGAAAG
CCTCTTACAGAAGTTTGCAGCTCAGGAGTTGATTGAAGTAAAGCGAAGTCTCCTACAAGA
TGATGCACACCCTACTCTTGTGACCTATGCTGATCATTCCAAGCTCTCTGCCATGATGGG
TGCTGTGGCAGAAAAGAAGGGCCCTGGGGAGGTAGCCGGGACCATCACAGGGCAGAAGAG
GCGTGCAGAACAGGACTCGACCACAGTAGCTGCCTTTGCAAGCTCTCTGACCTCTGGTCT
GGCCTCTTCAGCATCAGAAGTAGCCAAGGAGCCAACCAAGAAATCAAGGAAACATGCTGC
CTCAGATGTTGACCTGGAGATAGAGAGCCTTCTGAACCAACAATCTACTAAGGAACAACA
GAGCAAGAAGGTTAGTCAAGAGATCCTAGAACTATTAAATACTACAACAGCCAAGGAACA
ATCCATTGTTGAAAAGTTTCGTTCACGAGGTCGGGCTCAAGTGCAAGAATTCTGTGACTA
TGGAACCAAGGAGGAGTGCATGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61816894|ref|XP_593315.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61816894|ref|XP_593315.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               721-880, - strand, RNAz p=0.91086
               

               
               748-837, - strand, RNAz p=0.86642

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               721-880, - strand, RNAz p=0.91086
               

               
               748-837, - strand, RNAz p=0.86642

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               5-287, gnl|bosTau2|chr10 (16064692-16064406)
               

               
               5-287, gnl|Hg17|chr14 (21049388-21049106)
               

               
               5-287, gnl|Mm7|chr14 (47638812-47638568)
               


               
               486-912, gnl|bosTau2|chr10 (16055420-16054991)
               

               
               486-912, gnl|canFam2|chr15 (21540485-21540917)
               

               
               486-912, gnl|danRer3|chr7 (14793323-14792905)
               

               
               486-912, gnl|dasNov1|scaffold_58017 (7510-7075)
               

               
               486-912, gnl|echTel1|scaffold_307174 (56858-57300)
               

               
               486-912, gnl|fr1|chrUn (247419727-247420185)
               

               
               486-912, gnl|hg17|chr14 (21041135-21041568)
               

               
               486-912, gnl|Hg17|chr14 (21041585-21041154)
               

               
               486-912, gnl|loxAfr1|scaffold_7451 (63451-63017)
               

               
               486-912, gnl|mm7|chr14 (47633360-47633793)
               

               
               486-912, gnl|Mm7|chr14 (47633799-47633379)
               

               
               486-912, gnl|monDom2|scaffold_12 (29002673-29002246)
               

               
               486-912, gnl|oryCun1|scaffold_200927 (34485-34918)
               

               
               486-912, gnl|panTro1|chr15 (19958765-19959198)
               

               
               486-912, gnl|rheMac2|chr7 (84228577-84229010)
               

               
               486-912, gnl|rn3|chr15 (27764314-27764747)
               

               
               486-912, gnl|tetNig1|chr20 (706869-707324)
               

               
               486-912, gnl|xenTro1|scaffold_339 (123264-122850)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-287, gnl|bosTau2|chr10 (16064692-16064406)
               

               
               5-287, gnl|Hg17|chr14 (21049388-21049106)
               

               
               5-287, gnl|Mm7|chr14 (47638812-47638568)
               


               
               486-912, gnl|bosTau2|chr10 (16055420-16054991)
               

               
               486-912, gnl|canFam2|chr15 (21540485-21540917)
               

               
               486-912, gnl|danRer3|chr7 (14793323-14792905)
               

               
               486-912, gnl|dasNov1|scaffold_58017 (7510-7075)
               

               
               486-912, gnl|echTel1|scaffold_307174 (56858-57300)
               

               
               486-912, gnl|fr1|chrUn (247419727-247420185)
               

               
               486-912, gnl|hg17|chr14 (21041135-21041568)
               

               
               486-912, gnl|Hg17|chr14 (21041585-21041154)
               

               
               486-912, gnl|loxAfr1|scaffold_7451 (63451-63017)
               

               
               486-912, gnl|mm7|chr14 (47633360-47633793)
               

               
               486-912, gnl|Mm7|chr14 (47633799-47633379)
               

               
               486-912, gnl|monDom2|scaffold_12 (29002673-29002246)
               

               
               486-912, gnl|oryCun1|scaffold_200927 (34485-34918)
               

               
               486-912, gnl|panTro1|chr15 (19958765-19959198)
               

               
               486-912, gnl|rheMac2|chr7 (84228577-84229010)
               

               
               486-912, gnl|rn3|chr15 (27764314-27764747)
               

               
               486-912, gnl|tetNig1|chr20 (706869-707324)
               

               
               486-912, gnl|xenTro1|scaffold_339 (123264-122850)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	721-880, - strand, RNAz p=0.91086
	748-837, - strand, RNAz p=0.86642

	5-287, gnl\|bosTau2\|chr10 (16064692-16064406)
	5-287, gnl\|Hg17\|chr14 (21049388-21049106)
	5-287, gnl\|Mm7\|chr14 (47638812-47638568)

	486-912, gnl\|bosTau2\|chr10 (16055420-16054991)
	486-912, gnl\|canFam2\|chr15 (21540485-21540917)
	486-912, gnl\|danRer3\|chr7 (14793323-14792905)
	486-912, gnl\|dasNov1\|scaffold_58017 (7510-7075)
	486-912, gnl\|echTel1\|scaffold_307174 (56858-57300)
	486-912, gnl\|fr1\|chrUn (247419727-247420185)
	486-912, gnl\|hg17\|chr14 (21041135-21041568)
	486-912, gnl\|Hg17\|chr14 (21041585-21041154)
	486-912, gnl\|loxAfr1\|scaffold_7451 (63451-63017)
	486-912, gnl\|mm7\|chr14 (47633360-47633793)
	486-912, gnl\|Mm7\|chr14 (47633799-47633379)
	486-912, gnl\|monDom2\|scaffold_12 (29002673-29002246)
	486-912, gnl\|oryCun1\|scaffold_200927 (34485-34918)
	486-912, gnl\|panTro1\|chr15 (19958765-19959198)
	486-912, gnl\|rheMac2\|chr7 (84228577-84229010)
	486-912, gnl\|rn3\|chr15 (27764314-27764747)
	486-912, gnl\|tetNig1\|chr20 (706869-707324)
	486-912, gnl\|xenTro1\|scaffold_339 (123264-122850)