Non-Coding RNA Search

Ss1.1-Ova1-OVRM10161H07.5

Sequence:


               
               TGTGCTGCCCAGGGCCGGCCCGGCTGACCCCCTGGACTGGCTCTTTGGGGAGTCTCAGGA
AAAGCGGCCAAGTAGAAGGGACCTGCCAAGGAGGACTGGACTCCCTGCGGACCCCCAGGC
TCTGCGTAAAGAAACCAACAGTGGCAAGGCCCAGGGGGGCCCCAAAGGGAGGCTGTGTGA
GGCCAGGGCCCCAGAGCACTCTCTGGAGAGACCACTGAGGAACTGGCACCAGTGCTCCCC
AGCTTCCGTGCAACCTGGCAGGGATGCAGCCTCCTCCACAAGTCCCCGCCGCAGCAGCAT
CCTCAGAACTCTTTATTTGCACCTCCCTGTGATCCATGAACTCTGACCTCTCCCCAATAA
AGGCTTCTGTAAATAGTACACAGGTCTGGGTCACCTCCCCACCTTCCCTCCGAGTGGGGC
ACTACCCCTGGCAGGTCTCTGGGAGGAAACTGCCCCTCTGCTTTGGCAACTCTTAGTAAG
ATCCCTACTCTGAATAAGAGCCTAGCTCGCGTGATTTGCACTGTCCCTTGCCGGCTGGCT
GATCACCTTGGGCAAGTGACTTAACATCTCTGTTCCTGGGTTTTCTCATGGGTAAAAATG
GGGACAATTAATGGGATTTGCCTCCTAGGCTCTGCTGACAAGTAAACGGGCTAAAACACA
CCTCATGGCGTGCCTGATATGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTGCCCAGGGCCGGCCCGGCTGACCCCCTGGACTGGCTCTTTGGGGAGTCTCAGGA
AAAGCGGCCAAGTAGAAGGGACCTGCCAAGGAGGACTGGACTCCCTGCGGACCCCCAGGC
TCTGCGTAAAGAAACCAACAGTGGCAAGGCCCAGGGGGGCCCCAAAGGGAGGCTGTGTGA
GGCCAGGGCCCCAGAGCACTCTCTGGAGAGACCACTGAGGAACTGGCACCAGTGCTCCCC
AGCTTCCGTGCAACCTGGCAGGGATGCAGCCTCCTCCACAAGTCCCCGCCGCAGCAGCAT
CCTCAGAACTCTTTATTTGCACCTCCCTGTGATCCATGAACTCTGACCTCTCCCCAATAA
AGGCTTCTGTAAATAGTACACAGGTCTGGGTCACCTCCCCACCTTCCCTCCGAGTGGGGC
ACTACCCCTGGCAGGTCTCTGGGAGGAAACTGCCCCTCTGCTTTGGCAACTCTTAGTAAG
ATCCCTACTCTGAATAAGAGCCTAGCTCGCGTGATTTGCACTGTCCCTTGCCGGCTGGCT
GATCACCTTGGGCAAGTGACTTAACATCTCTGTTCCTGGGTTTTCTCATGGGTAAAAATG
GGGACAATTAATGGGATTTGCCTCCTAGGCTCTGCTGACAAGTAAACGGGCTAAAACACA
CCTCATGGCGTGCCTGATATGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57107161|ref|XP_534951.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57107161|ref|XP_534951.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-271, - strand, RNAz p=0.992096

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-271, - strand, RNAz p=0.992096

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-409, gnl|bosTau2|chr28 (33183878-33183474)
               

               
               5-409, gnl|Hg17|chr10 (44793199-44792785)
               

               
               5-409, gnl|Mm7|chr6 (116678317-116678713)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-409, gnl|bosTau2|chr28 (33183878-33183474)
               

               
               5-409, gnl|Hg17|chr10 (44793199-44792785)
               

               
               5-409, gnl|Mm7|chr6 (116678317-116678713)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	5-409, gnl\|bosTau2\|chr28 (33183878-33183474)
	5-409, gnl\|Hg17\|chr10 (44793199-44792785)
	5-409, gnl\|Mm7\|chr6 (116678317-116678713)