Ss1.1-Ova1-OVRM10164E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTTAACACCAAGATGGCGGACGGCCCGGACGAGTACGAGGCCGAGGCGGGCTGCGTGC CCCTGCTGCATCCCGAGGAAATCAAACCTCAAAGCCATTATAACCATGGATATGGTGACC CCCTCGGAAGGAAAACTCACATTGATGATTACAGCACATGGGACATAGTTAAGGCTACAC AATACGGGATATATGAACGCTGTCGAGAGTTGGTGGAAGCAGGTTACGATGTGCGGCAAC CAGACAAAGAAAATGTTACGCTCCTCCACTGGGCCGCCATCAATAACAGGATAGATTTAG TCAAATACTATATTTCGAAAGGTGCTATTGTGGATCAACTTGGAGGAGACCTAAATTCAA CTCCATTGCACTGGGCCACAAGACAAGGCCACCTATCTATGGTTGTACAACTAATGAAAT ATGGTGCAGATCCTTCATTAATTGATGGAGAAGGATGTAGCTGTATTCATCTGGCTGCTC AGTTTGGACATACCTCAATTGTTGCTTATCTGATAGCGAAAGGACAGGATGTAGATATGA TGGATCAGAATGGGATGACGCCTTTAATGTGGGCAGCTTATAGAACACACAGTGTGGATC CAACTAGATTGCTTTTAACATTCAATGTTTCAGTTAACCTTGGTGACAAGTATCACAAAA ACACTGCTCTGCATTGGGCAGTACTAGCAGGGAATACCACAGTCATTAGTCTTCTTTTGG AAGCTGGAGCTAATGTTGATGCCCAGAATATCAAGGGCGAATCAGCACTTGATTTGGCAA AGCAGAGAAAAAATGTGTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGCAAAAGGAT ACGACAATCCATCTTTCCTTAGAAAGCTGAAAGCTGATGAGGAATTTCGGCAGAAAGTAA TGCTAGGAACTCCTTTCCTAGTTATTTGGCTGGTTGGGTTTATAGCAGACCTAAATATTG ATTCTTGGCTCATTAAAGGGCTAATGTATGGTGGCGTTTGGGCTACAGTACAATTTCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTTAACACCAAGATGGCGGACGGCCCGGACGAGTACGAGGCCGAGGCGGGCTGCGTGC CCCTGCTGCATCCCGAGGAAATCAAACCTCAAAGCCATTATAACCATGGATATGGTGACC CCCTCGGAAGGAAAACTCACATTGATGATTACAGCACATGGGACATAGTTAAGGCTACAC AATACGGGATATATGAACGCTGTCGAGAGTTGGTGGAAGCAGGTTACGATGTGCGGCAAC CAGACAAAGAAAATGTTACGCTCCTCCACTGGGCCGCCATCAATAACAGGATAGATTTAG TCAAATACTATATTTCGAAAGGTGCTATTGTGGATCAACTTGGAGGAGACCTAAATTCAA CTCCATTGCACTGGGCCACAAGACAAGGCCACCTATCTATGGTTGTACAACTAATGAAAT ATGGTGCAGATCCTTCATTAATTGATGGAGAAGGATGTAGCTGTATTCATCTGGCTGCTC AGTTTGGACATACCTCAATTGTTGCTTATCTGATAGCGAAAGGACAGGATGTAGATATGA TGGATCAGAATGGGATGACGCCTTTAATGTGGGCAGCTTATAGAACACACAGTGTGGATC CAACTAGATTGCTTTTAACATTCAATGTTTCAGTTAACCTTGGTGACAAGTATCACAAAA ACACTGCTCTGCATTGGGCAGTACTAGCAGGGAATACCACAGTCATTAGTCTTCTTTTGG AAGCTGGAGCTAATGTTGATGCCCAGAATATCAAGGGCGAATCAGCACTTGATTTGGCAA AGCAGAGAAAAAATGTGTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGCAAAAGGAT ACGACAATCCATCTTTCCTTAGAAAGCTGAAAGCTGATGAGGAATTTCGGCAGAAAGTAA TGCTAGGAACTCCTTTCCTAGTTATTTGGCTGGTTGGGTTTATAGCAGACCTAAATATTG ATTCTTGGCTCATTAAAGGGCTAATGTATGGTGGCGTTTGGGCTACAGTACAATTTCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 381-499, - strand, RNAz p=0.540579 | |
| 590-774, - strand, RNAz p=0.97128 | |
| 880-998, + strand, RNAz p=0.627979 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-499, - strand, RNAz p=0.540579 | |
| 590-774, - strand, RNAz p=0.97128 | |
| 880-998, + strand, RNAz p=0.627979 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 182-307, gnl|bosTau2|chr29 (19474375-19474250) | |
| 182-307, gnl|canFam2|chr21 (44451022-44451178) | |
| 182-307, gnl|danRer3|chrUn (145850583-145850447) | |
| 182-307, gnl|dasNov1|scaffold_325 (156547-156380) | |
| 182-307, gnl|echTel1|scaffold_286473 (30928-30761) | |
| 182-307, gnl|fr1|chrUn (69179069-69178926) | |
| 182-307, gnl|galGal2|chr5 (1777344-1777184) | |
| 182-307, gnl|hg17|chr11 (19124290-19124450) | |
| 182-307, gnl|Hg17|chr11 (19124304-19124429) | |
| 182-307, gnl|loxAfr1|scaffold_80456 (5142-5306) | |
| 182-307, gnl|mm7|chr7 (45020480-45020649) | |
| 182-307, gnl|Mm7|chr7 (45020494-45020619) | |
| 182-307, gnl|monDom2|scaffold_10 (65015261-65015423) | |
| 182-307, gnl|oryCun1|scaffold_209768 (92704-92866) | |
| 182-307, gnl|panTro1|chr9 (19355254-19355413) | |
| 182-307, gnl|rheMac2|chr14 (52728787-52728627) | |
| 182-307, gnl|rn3|chr1 (98648273-98648437) | |
| 182-307, gnl|tetNig1|chr5 (12129082-12128938) | |
| 182-307, gnl|xenTro1|scaffold_1410 (121877-122006) | |
| 381-528, gnl|bosTau2|chr5 (4372836-4372689) | |
| 381-528, gnl|canFam2|chr15 (22689853-22690048) | |
| 381-528, gnl|danRer3|chrUn (145849765-145849551) | |
| 381-528, gnl|dasNov1|scaffold_176370 (1350-1543) | |
| 381-528, gnl|echTel1|scaffold_296904 (9709-9906) | |
| 381-528, gnl|fr1|chrUn (77972522-77972713) | |
| 381-528, gnl|galGal2|chr1 (35049716-35049911) | |
| 381-528, gnl|hg17|chr12 (75705927-75706122) | |
| 381-528, gnl|Hg17|chr12 (75705959-75706106) | |
| 381-528, gnl|loxAfr1|scaffold_114525 (29437-29244) | |
| 381-528, gnl|mm7|chr10 (110434126-110433934) | |
| 381-528, gnl|Mm7|chr10 (110434094-110433947) | |
| 381-528, gnl|monDom2|scaffold_36 (9404690-9404887) | |
| 381-528, gnl|oryCun1|scaffold_169642 (8796-8991) | |
| 381-528, gnl|panTro1|chr10 (77249317-77249508) | |
| 381-528, gnl|rheMac2|chr11 (73807447-73807640) | |
| 381-528, gnl|rn3|chr7 (49982037-49981845) | |
| 381-528, gnl|tetNig1|chrUn_random (111561759-111561592) | |
| 381-528, gnl|xenTro1|scaffold_128 (13540-13764) | |
| 590-774, gnl|bosTau2|chr5 (4366618-4366435) | |
| 590-774, gnl|Hg17|chr12 (75712102-75712285) | |
| 590-774, gnl|Mm7|chr10 (110428049-110427876) | |
| 880-1020, gnl|bosTau2|chr5 (4344224-4344084) | |
| 880-1020, gnl|canFam2|chr15 (22711454-22711635) | |
| 880-1020, gnl|danRer3|chrUn (145842898-145842722) | |
| 880-1020, gnl|dasNov1|scaffold_114747 (604-790) | |
| 880-1020, gnl|echTel1|scaffold_286708 (4793-4610) | |
| 880-1020, gnl|fr1|chrUn (77975380-77975537) | |
| 880-1020, gnl|galGal2|chr1 (35061621-35061803) | |
| 880-1020, gnl|hg17|chr12 (75723123-75723305) | |
| 880-1020, gnl|Hg17|chr12 (75723154-75723294) | |
| 880-1020, gnl|mm7|chr10 (110416699-110416481) | |
| 880-1020, gnl|Mm7|chr10 (110416630-110416490) | |
| 880-1020, gnl|monDom2|scaffold_36 (9432503-9432683) | |
| 880-1020, gnl|oryCun1|scaffold_136755 (5877-5696) | |
| 880-1020, gnl|panTro1|chr10 (77266588-77266769) | |
| 880-1020, gnl|rheMac2|chr11 (73824780-73824961) | |
| 880-1020, gnl|rn3|chr7 (49965780-49965575) | |
| 880-1020, gnl|tetNig1|chrUn_random (111558747-111558584) | |
| 880-1020, gnl|xenTro1|scaffold_128 (20367-20550) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-307, gnl|bosTau2|chr29 (19474375-19474250) | |
| 182-307, gnl|canFam2|chr21 (44451022-44451178) | |
| 182-307, gnl|danRer3|chrUn (145850583-145850447) | |
| 182-307, gnl|dasNov1|scaffold_325 (156547-156380) | |
| 182-307, gnl|echTel1|scaffold_286473 (30928-30761) | |
| 182-307, gnl|fr1|chrUn (69179069-69178926) | |
| 182-307, gnl|galGal2|chr5 (1777344-1777184) | |
| 182-307, gnl|hg17|chr11 (19124290-19124450) | |
| 182-307, gnl|Hg17|chr11 (19124304-19124429) | |
| 182-307, gnl|loxAfr1|scaffold_80456 (5142-5306) | |
| 182-307, gnl|mm7|chr7 (45020480-45020649) | |
| 182-307, gnl|Mm7|chr7 (45020494-45020619) | |
| 182-307, gnl|monDom2|scaffold_10 (65015261-65015423) | |
| 182-307, gnl|oryCun1|scaffold_209768 (92704-92866) | |
| 182-307, gnl|panTro1|chr9 (19355254-19355413) | |
| 182-307, gnl|rheMac2|chr14 (52728787-52728627) | |
| 182-307, gnl|rn3|chr1 (98648273-98648437) | |
| 182-307, gnl|tetNig1|chr5 (12129082-12128938) | |
| 182-307, gnl|xenTro1|scaffold_1410 (121877-122006) | |
| 381-528, gnl|bosTau2|chr5 (4372836-4372689) | |
| 381-528, gnl|canFam2|chr15 (22689853-22690048) | |
| 381-528, gnl|danRer3|chrUn (145849765-145849551) | |
| 381-528, gnl|dasNov1|scaffold_176370 (1350-1543) | |
| 381-528, gnl|echTel1|scaffold_296904 (9709-9906) | |
| 381-528, gnl|fr1|chrUn (77972522-77972713) | |
| 381-528, gnl|galGal2|chr1 (35049716-35049911) | |
| 381-528, gnl|hg17|chr12 (75705927-75706122) | |
| 381-528, gnl|Hg17|chr12 (75705959-75706106) | |
| 381-528, gnl|loxAfr1|scaffold_114525 (29437-29244) | |
| 381-528, gnl|mm7|chr10 (110434126-110433934) | |
| 381-528, gnl|Mm7|chr10 (110434094-110433947) | |
| 381-528, gnl|monDom2|scaffold_36 (9404690-9404887) | |
| 381-528, gnl|oryCun1|scaffold_169642 (8796-8991) | |
| 381-528, gnl|panTro1|chr10 (77249317-77249508) | |
| 381-528, gnl|rheMac2|chr11 (73807447-73807640) | |
| 381-528, gnl|rn3|chr7 (49982037-49981845) | |
| 381-528, gnl|tetNig1|chrUn_random (111561759-111561592) | |
| 381-528, gnl|xenTro1|scaffold_128 (13540-13764) | |
| 590-774, gnl|bosTau2|chr5 (4366618-4366435) | |
| 590-774, gnl|Hg17|chr12 (75712102-75712285) | |
| 590-774, gnl|Mm7|chr10 (110428049-110427876) | |
| 880-1020, gnl|bosTau2|chr5 (4344224-4344084) | |
| 880-1020, gnl|canFam2|chr15 (22711454-22711635) | |
| 880-1020, gnl|danRer3|chrUn (145842898-145842722) | |
| 880-1020, gnl|dasNov1|scaffold_114747 (604-790) | |
| 880-1020, gnl|echTel1|scaffold_286708 (4793-4610) | |
| 880-1020, gnl|fr1|chrUn (77975380-77975537) | |
| 880-1020, gnl|galGal2|chr1 (35061621-35061803) | |
| 880-1020, gnl|hg17|chr12 (75723123-75723305) | |
| 880-1020, gnl|Hg17|chr12 (75723154-75723294) | |
| 880-1020, gnl|mm7|chr10 (110416699-110416481) | |
| 880-1020, gnl|Mm7|chr10 (110416630-110416490) | |
| 880-1020, gnl|monDom2|scaffold_36 (9432503-9432683) | |
| 880-1020, gnl|oryCun1|scaffold_136755 (5877-5696) | |
| 880-1020, gnl|panTro1|chr10 (77266588-77266769) | |
| 880-1020, gnl|rheMac2|chr11 (73824780-73824961) | |
| 880-1020, gnl|rn3|chr7 (49965780-49965575) | |
| 880-1020, gnl|tetNig1|chrUn_random (111558747-111558584) | |
| 880-1020, gnl|xenTro1|scaffold_128 (20367-20550) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| ese (0.126502) | |
| ebs (0.118301) |