Non-Coding RNA Search

Ss1.1-Ova1-OVRM10164F12.5

Sequence:


               
               AAAGCAGGGGTTTAGAGTTATTTATATAAATGTTGAGCTTTTGCACTATTTTTTAATATA
AATATGTCAGTGCTTGTTTGATGGAAACTTCTATCACCGTCTGTCGAGACCTTTAAGGGA
GAAATGTTGGAAGTTCGTGGCCGGTGTCCGGCAGAGGGTGGGCCCCACGCTGCTGGAGAG
AGGCCCCGGTGGGCTCCTTTCCTGCTAGGGATGGGTTCGTACCTGTTACACGCTCCCGCC
CCAAGGAGATGCATTGTTCCCCCCTCTGGGCCAGGACAGCTTCTGGATCGCAAATGAAAT
AGGAAAGGTAACCGAAAGGCACCGAATTCCAGGAGCTGGGCTTTCTGCTCTTCCCGAGAT
AAAGATAAACTGTTGCTGAAGGAACCTTAGTTTTTCCTCTCTCTTTAAACCATGAAGGTC
CCCGTAGGAGGGGGCTGACGAAGGTGCTTTTCGCGCCCTGCCCGTTGTGTCAGGGCCATG
CCGGAGGAGGCGGCTGGGTGGCTTGTGTGCCCAGGATACTTGGTGATTGGCTGGTCCCAG
GCGCTCTCGGCTGCGGTGGGTGCAGCCCGCTGGCGTAGAGGAAAGGCCCAGAGGACCGTA
AGAACGTGCCCTCATCCCCATCTCTTCTCTGTGTGTATCGAGTCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCAGGGGTTTAGAGTTATTTATATAAATGTTGAGCTTTTGCACTATTTTTTAATATA
AATATGTCAGTGCTTGTTTGATGGAAACTTCTATCACCGTCTGTCGAGACCTTTAAGGGA
GAAATGTTGGAAGTTCGTGGCCGGTGTCCGGCAGAGGGTGGGCCCCACGCTGCTGGAGAG
AGGCCCCGGTGGGCTCCTTTCCTGCTAGGGATGGGTTCGTACCTGTTACACGCTCCCGCC
CCAAGGAGATGCATTGTTCCCCCCTCTGGGCCAGGACAGCTTCTGGATCGCAAATGAAAT
AGGAAAGGTAACCGAAAGGCACCGAATTCCAGGAGCTGGGCTTTCTGCTCTTCCCGAGAT
AAAGATAAACTGTTGCTGAAGGAACCTTAGTTTTTCCTCTCTCTTTAAACCATGAAGGTC
CCCGTAGGAGGGGGCTGACGAAGGTGCTTTTCGCGCCCTGCCCGTTGTGTCAGGGCCATG
CCGGAGGAGGCGGCTGGGTGGCTTGTGTGCCCAGGATACTTGGTGATTGGCTGGTCCCAG
GCGCTCTCGGCTGCGGTGGGTGCAGCCCGCTGGCGTAGAGGAAAGGCCCAGAGGACCGTA
AGAACGTGCCCTCATCCCCATCTCTTCTCTGTGTGTATCGAGTCTCCT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-623, gnl|bosTau2|chr13 (39841575-39842225)
               

               
               1-623, gnl|canFam2|chr24 (45582737-45583333)
               

               
               1-623, gnl|dasNov1|scaffold_127495 (2784-3406)
               

               
               1-623, gnl|echTel1|scaffold_286616 (4095-3533)
               

               
               1-623, gnl|hg17|chr20 (55659229-55659826)
               

               
               1-623, gnl|Hg17|chr20 (55659943-55659273)
               

               
               1-623, gnl|loxAfr1|scaffold_43858 (17184-17718)
               

               
               1-623, gnl|mm7|chr2 (172970926-172971519)
               

               
               1-623, gnl|Mm7|chr2 (172971631-172970967)
               

               
               1-623, gnl|monDom2|scaffold_1 (171584864-171585550)
               

               
               1-623, gnl|oryCun1|scaffold_149126 (4305-3859)
               

               
               1-623, gnl|panTro1|chr21 (58586987-58587584)
               

               
               1-623, gnl|rheMac2|chr10 (6867619-6867015)
               

               
               1-623, gnl|rn3|chr3 (164002719-164003345)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-623, gnl|bosTau2|chr13 (39841575-39842225)
               

               
               1-623, gnl|canFam2|chr24 (45582737-45583333)
               

               
               1-623, gnl|dasNov1|scaffold_127495 (2784-3406)
               

               
               1-623, gnl|echTel1|scaffold_286616 (4095-3533)
               

               
               1-623, gnl|hg17|chr20 (55659229-55659826)
               

               
               1-623, gnl|Hg17|chr20 (55659943-55659273)
               

               
               1-623, gnl|loxAfr1|scaffold_43858 (17184-17718)
               

               
               1-623, gnl|mm7|chr2 (172970926-172971519)
               

               
               1-623, gnl|Mm7|chr2 (172971631-172970967)
               

               
               1-623, gnl|monDom2|scaffold_1 (171584864-171585550)
               

               
               1-623, gnl|oryCun1|scaffold_149126 (4305-3859)
               

               
               1-623, gnl|panTro1|chr21 (58586987-58587584)
               

               
               1-623, gnl|rheMac2|chr10 (6867619-6867015)
               

               
               1-623, gnl|rn3|chr3 (164002719-164003345)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-623, gnl\|bosTau2\|chr13 (39841575-39842225)
	1-623, gnl\|canFam2\|chr24 (45582737-45583333)
	1-623, gnl\|dasNov1\|scaffold_127495 (2784-3406)
	1-623, gnl\|echTel1\|scaffold_286616 (4095-3533)
	1-623, gnl\|hg17\|chr20 (55659229-55659826)
	1-623, gnl\|Hg17\|chr20 (55659943-55659273)
	1-623, gnl\|loxAfr1\|scaffold_43858 (17184-17718)
	1-623, gnl\|mm7\|chr2 (172970926-172971519)
	1-623, gnl\|Mm7\|chr2 (172971631-172970967)
	1-623, gnl\|monDom2\|scaffold_1 (171584864-171585550)
	1-623, gnl\|oryCun1\|scaffold_149126 (4305-3859)
	1-623, gnl\|panTro1\|chr21 (58586987-58587584)
	1-623, gnl\|rheMac2\|chr10 (6867619-6867015)
	1-623, gnl\|rn3\|chr3 (164002719-164003345)