Ss1.1-Ova1-OVRM10167A07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAACTTCCCAGTCTCCTGAAGGAAAGAGAGTTTCACCTTGGGACCCTCAATAAAGTGTT TGCATCTCAGTGGCTAAATCATAGGCAAGTGGTGTGTGGCACAAAATGCAACACGCTGTT TGTAATGGATGTCCAGACAAGCCAGATCACCAAGATTCCCATTTTGAAGGACCGAGAGCC TGGAGGTGTGACACAGCAGGGCTGTGGTATCCATGCTATTGAGCTGAATCCCTCTAGAAC ACTGTTAGCCACTGGAGGAGACAACCCCAACAGTCTTGCCATCTACCGGCTGCCTACACT AGATCCTGTGTGTGTGGGAGATGATGGACACAAGGACTGGATTTTTTCCATTGCATGGAT CAGTGACACTATGGCAGTGTCTGGCTCCCGTGATGGTTCTATGGGACTCTGGGAGGTGAC AGACGATGTGTTGACCAAAAGTGATGCAAGGCACAATGTGTCACGGGTCCCTGTATATGC TCACATCACTCACAAGGCTTTAAAGGACATCCCCAAGGAGGACACAAATCCTGATAACTG CAAGGTCCGGGCTCTGGCCTTCAACAACAAGAACAAGGAATTGGGAGCAGTGTCTCTGGA TGGCTACTTTCATCTCTGGAAGGCTGAAAATACACTGTCTAAGCTCCTCTCCACCAAACT GCCATATTGCCGTGAGAATGTGTGCCTGGCTTATGGTAGTGAATGGTCAGTGTACGCAGT GGGCTCCCAAGCTCATGTCTCCTTCTTGGATCCACGGCAGCCATCGTACAACGTCAAGTC CGTCTGCTCCAGGGAGCGAGGCAGTGGGATCCGGTCAGTGAGCTTCTATGAGCACATCAT CACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAGAGATTCCT GGAAGAGAGGCTCTCAGCTTGTTATGGGTCCAAGCCCAGGCTAGCAGGGGAGAATCTGAA ACTAACCACTGGCAAAGGCTGGCTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGA CATTGATTTCTTCCCTAATGCTGTTTACACCCACTGCTACGACTCGTCCGGGACGAAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAACTTCCCAGTCTCCTGAAGGAAAGAGAGTTTCACCTTGGGACCCTCAATAAAGTGTT TGCATCTCAGTGGCTAAATCATAGGCAAGTGGTGTGTGGCACAAAATGCAACACGCTGTT TGTAATGGATGTCCAGACAAGCCAGATCACCAAGATTCCCATTTTGAAGGACCGAGAGCC TGGAGGTGTGACACAGCAGGGCTGTGGTATCCATGCTATTGAGCTGAATCCCTCTAGAAC ACTGTTAGCCACTGGAGGAGACAACCCCAACAGTCTTGCCATCTACCGGCTGCCTACACT AGATCCTGTGTGTGTGGGAGATGATGGACACAAGGACTGGATTTTTTCCATTGCATGGAT CAGTGACACTATGGCAGTGTCTGGCTCCCGTGATGGTTCTATGGGACTCTGGGAGGTGAC AGACGATGTGTTGACCAAAAGTGATGCAAGGCACAATGTGTCACGGGTCCCTGTATATGC TCACATCACTCACAAGGCTTTAAAGGACATCCCCAAGGAGGACACAAATCCTGATAACTG CAAGGTCCGGGCTCTGGCCTTCAACAACAAGAACAAGGAATTGGGAGCAGTGTCTCTGGA TGGCTACTTTCATCTCTGGAAGGCTGAAAATACACTGTCTAAGCTCCTCTCCACCAAACT GCCATATTGCCGTGAGAATGTGTGCCTGGCTTATGGTAGTGAATGGTCAGTGTACGCAGT GGGCTCCCAAGCTCATGTCTCCTTCTTGGATCCACGGCAGCCATCGTACAACGTCAAGTC CGTCTGCTCCAGGGAGCGAGGCAGTGGGATCCGGTCAGTGAGCTTCTATGAGCACATCAT CACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAGAGATTCCT GGAAGAGAGGCTCTCAGCTTGTTATGGGTCCAAGCCCAGGCTAGCAGGGGAGAATCTGAA ACTAACCACTGGCAAAGGCTGGCTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGA CATTGATTTCTTCCCTAATGCTGTTTACACCCACTGCTACGACTCGTCCGGGACGAAACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 828-939, - strand, RNAz p=0.913803 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 828-939, - strand, RNAz p=0.913803 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 115-323, gnl|bosTau2|chr8 (39972599-39972391) | |
| 115-323, gnl|Hg17|chr9 (34097564-34097356) | |
| 115-323, gnl|Mm7|chr4 (41441284-41441076) | |
| 383-581, gnl|bosTau2|chr8 (39964615-39964417) | |
| 383-581, gnl|Hg17|chr9 (34088516-34088318) | |
| 383-581, gnl|Mm7|chr4 (41438064-41437866) | |
| 806-985, gnl|bosTau2|chr8 (39960262-39960083) | |
| 806-985, gnl|canFam2|chr11 (53877123-53877328) | |
| 806-985, gnl|dasNov1|scaffold_15600 (15131-14926) | |
| 806-985, gnl|echTel1|scaffold_264968 (3277-3453) | |
| 806-985, gnl|fr1|chrUn (114741472-114741268) | |
| 806-985, gnl|galGal2|chrZ_random (7074888-7075093) | |
| 806-985, gnl|hg17|chr9 (34079398-34079603) | |
| 806-985, gnl|Hg17|chr9 (34079589-34079410) | |
| 806-985, gnl|loxAfr1|scaffold_44596 (14724-14517) | |
| 806-985, gnl|mm7|chr4 (41432384-41432587) | |
| 806-985, gnl|Mm7|chr4 (41432575-41432396) | |
| 806-985, gnl|monDom2|scaffold_83 (4520889-4520690) | |
| 806-985, gnl|oryCun1|scaffold_206868 (20639-20434) | |
| 806-985, gnl|panTro1|chr11 (34608332-34608537) | |
| 806-985, gnl|rheMac2|chr15 (43441602-43441397) | |
| 806-985, gnl|rn3|chr1 (125078762-125078938) | |
| 806-985, gnl|tetNig1|chr11 (792695-792883) | |
| 806-985, gnl|xenTro1|scaffold_617 (358321-358510) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-323, gnl|bosTau2|chr8 (39972599-39972391) | |
| 115-323, gnl|Hg17|chr9 (34097564-34097356) | |
| 115-323, gnl|Mm7|chr4 (41441284-41441076) | |
| 383-581, gnl|bosTau2|chr8 (39964615-39964417) | |
| 383-581, gnl|Hg17|chr9 (34088516-34088318) | |
| 383-581, gnl|Mm7|chr4 (41438064-41437866) | |
| 806-985, gnl|bosTau2|chr8 (39960262-39960083) | |
| 806-985, gnl|canFam2|chr11 (53877123-53877328) | |
| 806-985, gnl|dasNov1|scaffold_15600 (15131-14926) | |
| 806-985, gnl|echTel1|scaffold_264968 (3277-3453) | |
| 806-985, gnl|fr1|chrUn (114741472-114741268) | |
| 806-985, gnl|galGal2|chrZ_random (7074888-7075093) | |
| 806-985, gnl|hg17|chr9 (34079398-34079603) | |
| 806-985, gnl|Hg17|chr9 (34079589-34079410) | |
| 806-985, gnl|loxAfr1|scaffold_44596 (14724-14517) | |
| 806-985, gnl|mm7|chr4 (41432384-41432587) | |
| 806-985, gnl|Mm7|chr4 (41432575-41432396) | |
| 806-985, gnl|monDom2|scaffold_83 (4520889-4520690) | |
| 806-985, gnl|oryCun1|scaffold_206868 (20639-20434) | |
| 806-985, gnl|panTro1|chr11 (34608332-34608537) | |
| 806-985, gnl|rheMac2|chr15 (43441602-43441397) | |
| 806-985, gnl|rn3|chr1 (125078762-125078938) | |
| 806-985, gnl|tetNig1|chr11 (792695-792883) | |
| 806-985, gnl|xenTro1|scaffold_617 (358321-358510) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| amn (0.417711) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| ski (0.146735) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| ski (0.146735) |