Non-Coding RNA Search

Ss1.1-Ova1-OVRM10168C07.5

Sequence:


               
               TTTCTGCTTACTATCCTAAAGTTGTGGGAGTTAGTGAAGCTTATGAGGATGCTGCCAATT
GTCTCTGGTTGTTAACTAACTCCAAGCCTTGTGCTAACTGTAAGTCTCCAATACAGAAGA
ATGAGGGATGCAATCACATGCAGTGTGCCAAGGTAAGGTAAACAGCATTATACCCGCTTT
GCAATTAAAATCTTATTTTTATTGAGTCCAAAGAAAAAGATGCTGTAAGCATAAAAATAT
TGTTGCCTTTCAGATGGATTCTAGGAGATTGTATTCTCCATTATTTGTTAAATAACAGAA
TAATAAATTAACATGAATGAATTATCTTAGTGAGACAGTGATAATGATTTGCTAAGAAGA
AAACCGTATACAGCATTCTAAATAAAATGCTGGTCAGGCCAAAATTATTTTGTTTATTTT
CAGTCCTGTCTCCCATATCCATGTTAGTTTTTTTCTTGGACAGTCTTATATAGACCACGC
TAATATGTAAAAAAAAAAATACAGGTTGATCATCAGTATTAGCAATTGGGCTACAAACAA
AGAGGTGGAATCCAACATTATGTTTATTTTGGTCATGGCACCTACCAGCTATGTAGATAG
TTGATGATATGTATTGAGCAAATGAATATGATACAAGATAATCTCTCTTACGATACAAGG
TAATCTCTCTTAAGATACAAGGTAATCTCTCTTAAACAGATTTTGCTTAAGCTTCTGTTG
CATTCAAGAGAAACATTTATTTACATACTATATAAATGTAGTCTTATCCATCTGAAGTAT
TTGCATTGAACAAAGGAATAAGAGTAATTTGAGTAAGAGTAGTTGATATGACAAAAGAAG
ACATTTAGAAAGTGAATGTTTTTATACTTGTAGGGTGTTTTTTTATGTAAAGGTGGGATA
ACAGGTCACCTGTAATTGAGTCCATGCTCTGGCACATGAATGAATCATAATGTACCTTTA
TTAATACTGCAGTGTTGATTATGACTCAGTAGATAGTTTTTACTTTCTGGAATCAAATTG
TTAAGCATTTTAGAAGAATGACAGATTTGGCCCTATAAAAAAAGTGCATTCATTTTAAAA
ATTATCTTTATTCAGAGTTCCCATCGTGGCACAGTGGTTAACGAATCCGACTAGGAACCA
TGAGGTTGCGGGTTCGATCCCTGCCCTTGCTCAGTGGGTTAACGATCTGACATTGCCGTG
AGCTGTGGTGCAGGTTGCAGACGCGGCTCGGATCCTGCGTTGCTGTGGCTCTGGCGTAGG
CCGGTGGCTACAGCTCCAATTGGACCCCTAGCCTGGGAACCTCCATATGCCGCGGGATGG
GCCCAAGAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTGCTTACTATCCTAAAGTTGTGGGAGTTAGTGAAGCTTATGAGGATGCTGCCAATT
GTCTCTGGTTGTTAACTAACTCCAAGCCTTGTGCTAACTGTAAGTCTCCAATACAGAAGA
ATGAGGGATGCAATCACATGCAGTGTGCCAAGGTAAGGTAAACAGCATTATACCCGCTTT
GCAATTAAAATCTTATTTTTATTGAGTCCAAAGAAAAAGATGCTGTAAGCATAAAAATAT
TGTTGCCTTTCAGATGGATTCTAGGAGATTGTATTCTCCATTATTTGTTAAATAACAGAA
TAATAAATTAACATGAATGAATTATCTTAGTGAGACAGTGATAATGATTTGCTAAGAAGA
AAACCGTATACAGCATTCTAAATAAAATGCTGGTCAGGCCAAAATTATTTTGTTTATTTT
CAGTCCTGTCTCCCATATCCATGTTAGTTTTTTTCTTGGACAGTCTTATATAGACCACGC
TAATATGTAAAAAAAAAAATACAGGTTGATCATCAGTATTAGCAATTGGGCTACAAACAA
AGAGGTGGAATCCAACATTATGTTTATTTTGGTCATGGCACCTACCAGCTATGTAGATAG
TTGATGATATGTATTGAGCAAATGAATATGATACAAGATAATCTCTCTTACGATACAAGG
TAATCTCTCTTAAGATACAAGGTAATCTCTCTTAAACAGATTTTGCTTAAGCTTCTGTTG
CATTCAAGAGAAACATTTATTTACATACTATATAAATGTAGTCTTATCCATCTGAAGTAT
TTGCATTGAACAAAGGAATAAGAGTAATTTGAGTAAGAGTAGTTGATATGACAAAAGAAG
ACATTTAGAAAGTGAATGTTTTTATACTTGTAGGGTGTTTTTTTATGTAAAGGTGGGATA
ACAGGTCACCTGTAATTGAGTCCATGCTCTGGCACATGAATGAATCATAATGTACCTTTA
TTAATACTGCAGTGTTGATTATGACTCAGTAGATAGTTTTTACTTTCTGGAATCAAATTG
TTAAGCATTTTAGAAGAATGACAGATTTGGCCCTATAAAAAAAGTGCATTCATTTTAAAA
ATTATCTTTATTCAGAGTTCCCATCGTGGCACAGTGGTTAACGAATCCGACTAGGAACCA
TGAGGTTGCGGGTTCGATCCCTGCCCTTGCTCAGTGGGTTAACGATCTGACATTGCCGTG
AGCTGTGGTGCAGGTTGCAGACGCGGCTCGGATCCTGCGTTGCTGTGGCTCTGGCGTAGG
CCGGTGGCTACAGCTCCAATTGGACCCCTAGCCTGGGAACCTCCATATGCCGCGGGATGG
GCCCAAGAAATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-295, gnl|bosTau2|chr4 (1277546-1277838)
               


               
               776-1076, gnl|bosTau2|chr4 (1279248-1279557)
               

               
               776-1076, gnl|Hg17|chr7 (91647515-91647817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-295, gnl|bosTau2|chr4 (1277546-1277838)
               


               
               776-1076, gnl|bosTau2|chr4 (1279248-1279557)
               

               
               776-1076, gnl|Hg17|chr7 (91647515-91647817)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-295, gnl\|bosTau2\|chr4 (1277546-1277838)

	776-1076, gnl\|bosTau2\|chr4 (1279248-1279557)
	776-1076, gnl\|Hg17\|chr7 (91647515-91647817)