Ss1.1-Ova1-OVRM10168E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGACAAAGAGACCTTGGCCCCAGCGCAGTCCCGCGCGGCGGTCGGGCTCGCCTCCGAG ACTCCCAGGGCCATGGCCAGGTCTCCGCGCCACCCCGCTCTCCGGAGCGTCGCCCTCTCC ATCTGACCGCCCTCCAGCGCCCCCGTCCCCTCCCGGTTCCGGGCTGTCCCTCGACTTCGA GCCCTTTCTGCACACCGGTCTGTCCGTCTCTCTGTCGGTTTGTCCTGGCGCGCAACCTCC GGCCACTGGCTTGGATGGACGCGCGGAGGCTGCCCGGGTGTCCAGGGGTCTTGCTTCCGA AGTTGGTGCTGCTCTTTGTCTACGCAGAAGATTGCCTTGCTCAGTGTGGCAAAGACTGCA AATCTTACTGCTGTGATGGAACCACACCCTACTGTTGCTCCTACTATGCCTATATTGGGA ATATTCTCTCGGGCACAGCCATTGCTGGCATAGTGTTTGGCATCGTATTCATCATGGGGG TCATTGCTGGAATTGCTATATGTATCTGCATGTGCATGAAAAACAACCGTGGGCCCCGGG TGGGCGTCATCAGGACCACCCACATCAATGCCATCGCCTCCTACCCTGTAGCACCACCCC CGTATAGTTATGACCACGAGATGGAATACTGTGCAGACCTGCCTCCTCCATACACCCCGA CCCCAGCTCAACGTTCCCCACCCCCTCCTTATCCTGGAAATTCAAGGAAGTAATCCCTCT CCCAGAACCGAATATGTGTCAATCAGAGATCTCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGACAAAGAGACCTTGGCCCCAGCGCAGTCCCGCGCGGCGGTCGGGCTCGCCTCCGAG ACTCCCAGGGCCATGGCCAGGTCTCCGCGCCACCCCGCTCTCCGGAGCGTCGCCCTCTCC ATCTGACCGCCCTCCAGCGCCCCCGTCCCCTCCCGGTTCCGGGCTGTCCCTCGACTTCGA GCCCTTTCTGCACACCGGTCTGTCCGTCTCTCTGTCGGTTTGTCCTGGCGCGCAACCTCC GGCCACTGGCTTGGATGGACGCGCGGAGGCTGCCCGGGTGTCCAGGGGTCTTGCTTCCGA AGTTGGTGCTGCTCTTTGTCTACGCAGAAGATTGCCTTGCTCAGTGTGGCAAAGACTGCA AATCTTACTGCTGTGATGGAACCACACCCTACTGTTGCTCCTACTATGCCTATATTGGGA ATATTCTCTCGGGCACAGCCATTGCTGGCATAGTGTTTGGCATCGTATTCATCATGGGGG TCATTGCTGGAATTGCTATATGTATCTGCATGTGCATGAAAAACAACCGTGGGCCCCGGG TGGGCGTCATCAGGACCACCCACATCAATGCCATCGCCTCCTACCCTGTAGCACCACCCC CGTATAGTTATGACCACGAGATGGAATACTGTGCAGACCTGCCTCCTCCATACACCCCGA CCCCAGCTCAACGTTCCCCACCCCCTCCTTATCCTGGAAATTCAAGGAAGTAATCCCTCT CCCAGAACCGAATATGTGTCAATCAGAGATCTCACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-93, - strand, RNAz p=0.556829 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-93, - strand, RNAz p=0.556829 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-327, gnl|bosTau2|chr1 (5517385-5517065) | |
| 1-327, gnl|canFam2|chr31 (24977351-24978316) | |
| 1-327, gnl|dasNov1|scaffold_2034 (5089-4195) | |
| 1-327, gnl|echTel1|scaffold_311340 (87982-88944) | |
| 1-327, gnl|hg17|chr21 (26866773-26867742) | |
| 1-327, gnl|Hg17|chr21 (26867385-26867058) | |
| 1-327, gnl|loxAfr1|scaffold_12154 (46143-47138) | |
| 1-327, gnl|mm7|chr16 (85545746-85546690) | |
| 1-327, gnl|Mm7|chr16 (85546277-85545961) | |
| 1-327, gnl|oryCun1|scaffold_190114 (10240-11207) | |
| 1-327, gnl|panTro1|chr22 (26866159-26867128) | |
| 1-327, gnl|rheMac2|chr3 (20094244-20093269) | |
| 1-327, gnl|rn3|chr11 (25156724-25157656) | |
| 431-588, gnl|bosTau2|chr1 (5416291-5416134) | |
| 431-588, gnl|canFam2|chr31 (24889580-24889740) | |
| 431-588, gnl|dasNov1|scaffold_160639 (291-419) | |
| 431-588, gnl|echTel1|scaffold_243893 (8252-8097) | |
| 431-588, gnl|fr1|chrUn (257991678-257991830) | |
| 431-588, gnl|galGal2|chr1 (96659985-96660128) | |
| 431-588, gnl|hg17|chr21 (26774437-26774590) | |
| 431-588, gnl|Hg17|chr21 (26774619-26774462) | |
| 431-588, gnl|mm7|chr16 (85461431-85461581) | |
| 431-588, gnl|Mm7|chr16 (85461610-85461456) | |
| 431-588, gnl|oryCun1|scaffold_206864 (26845-26996) | |
| 431-588, gnl|panTro1|chr22 (26773286-26773439) | |
| 431-588, gnl|rheMac2|chr3 (20185289-20185136) | |
| 431-588, gnl|rn3|chr11 (25053717-25053867) | |
| 431-588, gnl|tetNig1|chr3 (5884607-5884472) | |
| 431-588, gnl|xenTro1|scaffold_114 (1067938-1068067) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-327, gnl|bosTau2|chr1 (5517385-5517065) | |
| 1-327, gnl|canFam2|chr31 (24977351-24978316) | |
| 1-327, gnl|dasNov1|scaffold_2034 (5089-4195) | |
| 1-327, gnl|echTel1|scaffold_311340 (87982-88944) | |
| 1-327, gnl|hg17|chr21 (26866773-26867742) | |
| 1-327, gnl|Hg17|chr21 (26867385-26867058) | |
| 1-327, gnl|loxAfr1|scaffold_12154 (46143-47138) | |
| 1-327, gnl|mm7|chr16 (85545746-85546690) | |
| 1-327, gnl|Mm7|chr16 (85546277-85545961) | |
| 1-327, gnl|oryCun1|scaffold_190114 (10240-11207) | |
| 1-327, gnl|panTro1|chr22 (26866159-26867128) | |
| 1-327, gnl|rheMac2|chr3 (20094244-20093269) | |
| 1-327, gnl|rn3|chr11 (25156724-25157656) | |
| 431-588, gnl|bosTau2|chr1 (5416291-5416134) | |
| 431-588, gnl|canFam2|chr31 (24889580-24889740) | |
| 431-588, gnl|dasNov1|scaffold_160639 (291-419) | |
| 431-588, gnl|echTel1|scaffold_243893 (8252-8097) | |
| 431-588, gnl|fr1|chrUn (257991678-257991830) | |
| 431-588, gnl|galGal2|chr1 (96659985-96660128) | |
| 431-588, gnl|hg17|chr21 (26774437-26774590) | |
| 431-588, gnl|Hg17|chr21 (26774619-26774462) | |
| 431-588, gnl|mm7|chr16 (85461431-85461581) | |
| 431-588, gnl|Mm7|chr16 (85461610-85461456) | |
| 431-588, gnl|oryCun1|scaffold_206864 (26845-26996) | |
| 431-588, gnl|panTro1|chr22 (26773286-26773439) | |
| 431-588, gnl|rheMac2|chr3 (20185289-20185136) | |
| 431-588, gnl|rn3|chr11 (25053717-25053867) | |
| 431-588, gnl|tetNig1|chr3 (5884607-5884472) | |
| 431-588, gnl|xenTro1|scaffold_114 (1067938-1068067) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| cty (0.10408) | |
| ldo (0.0970026) |