Non-Coding RNA Search

Ss1.1-Ova1-OVRM10169B07.5

Sequence:


               
               AGTGCAGCACACCCGGGGGTCTCTTCCCAAAGTAGGCCACCAGCTCCATCTTCTCCCTGG
GCTCGTCCCCAGAGCCAAAGTGTCGCAGCTCTTTCTTGAAGGCCTTGTGGTTGCCCAGCT
CCTCCAGGAAGGTCTGGCCGGCTTTGCGGAGGCTCTCGGAACTCTTCCTGGACAGGAACC
AGCCAAAGTAGAGCGGCAGGAAGTCCTTCTCCAGCCCAGGCTTCAGCTTCTTCAGATCGT
CGGCCGACAGCTGCCAGTGGTTCTTCTCCTTGAGCTGGGCACAGTCCAGCCGCCACGCCG
TCTTGGGCTCCACCAGCACCACCTGGTACTGGTACTGGTCGGCCATCTCAAAGAGCTGCT
CCAGCCGCTCCCGCTCGTGGTTGGTGTCGTCCAGCACGAGGACACGGATGTCCCGGCGGC
AGCAGGCGGCCAGGTCCTCGTCCAGCCGCTTGTACTCCTCGGTGAAGGCTCCTCTGGCGC
CGGGGGTGATCTTGTAGGCATCGGCGGACACCACCTTGGTGCCATCCCGGTACCTGTCCA
TGATGACCTGGGCCAGCGTGGACTTGCCGCTCCCGGGCAGGCCGCGCAGGATGAAGAGCG
TCTTGCACTCCTGCAGCGTGGCCACCGTCTCCTCATCCTGCAGGAAGGGAAACTGCAGCT
CCGGCTTGTCCTTGGCCCCTGAGGATGACATTTTGCGGAAGAAGATCTTGGGCAGGAACG
TTTGGCTCTTTCGGGAGAAGCCTCTATTCATGATGAGGAGGAGGCGCCGCGGTCGCCGCC
TTCGCAGCACTGGCTCTCCGGGGCCGCCCGCCCGCGCGGAGGGACACGGAGTCTAGCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCAGCACACCCGGGGGTCTCTTCCCAAAGTAGGCCACCAGCTCCATCTTCTCCCTGG
GCTCGTCCCCAGAGCCAAAGTGTCGCAGCTCTTTCTTGAAGGCCTTGTGGTTGCCCAGCT
CCTCCAGGAAGGTCTGGCCGGCTTTGCGGAGGCTCTCGGAACTCTTCCTGGACAGGAACC
AGCCAAAGTAGAGCGGCAGGAAGTCCTTCTCCAGCCCAGGCTTCAGCTTCTTCAGATCGT
CGGCCGACAGCTGCCAGTGGTTCTTCTCCTTGAGCTGGGCACAGTCCAGCCGCCACGCCG
TCTTGGGCTCCACCAGCACCACCTGGTACTGGTACTGGTCGGCCATCTCAAAGAGCTGCT
CCAGCCGCTCCCGCTCGTGGTTGGTGTCGTCCAGCACGAGGACACGGATGTCCCGGCGGC
AGCAGGCGGCCAGGTCCTCGTCCAGCCGCTTGTACTCCTCGGTGAAGGCTCCTCTGGCGC
CGGGGGTGATCTTGTAGGCATCGGCGGACACCACCTTGGTGCCATCCCGGTACCTGTCCA
TGATGACCTGGGCCAGCGTGGACTTGCCGCTCCCGGGCAGGCCGCGCAGGATGAAGAGCG
TCTTGCACTCCTGCAGCGTGGCCACCGTCTCCTCATCCTGCAGGAAGGGAAACTGCAGCT
CCGGCTTGTCCTTGGCCCCTGAGGATGACATTTTGCGGAAGAAGATCTTGGGCAGGAACG
TTTGGCTCTTTCGGGAGAAGCCTCTATTCATGATGAGGAGGAGGCGCCGCGGTCGCCGCC
TTCGCAGCACTGGCTCTCCGGGGCCGCCCGCCCGCGCGGAGGGACACGGAGTCTAGCGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|192655|gb|AAA37431.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|192655|gb|AAA37431.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               264-383, - strand, RNAz p=0.964037

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-383, - strand, RNAz p=0.964037

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-761, gnl|bosTau2|chr23 (25200-25894)
               

               
               67-761, gnl|Hg17|chr17 (37374296-37373599)
               

               
               67-761, gnl|Mm7|chr11 (100685959-100685262)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-761, gnl|bosTau2|chr23 (25200-25894)
               

               
               67-761, gnl|Hg17|chr17 (37374296-37373599)
               

               
               67-761, gnl|Mm7|chr11 (100685959-100685262)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	67-761, gnl\|bosTau2\|chr23 (25200-25894)
	67-761, gnl\|Hg17\|chr17 (37374296-37373599)
	67-761, gnl\|Mm7\|chr11 (100685959-100685262)