Non-Coding RNA Search

Ss1.1-Ova1-OVRM10169E08.5

Sequence:


               
               AGGGTCGGCTTCGGGTGTGTGGTGGCGGCAGAGCCGAGCTGCGAGGCCCGAGAGTCAGAA
CCTGGGGGAGAGGGATGGTCTCTGCACGGGGGGGAGCCGGAGGAGCCGCCGCCGCTGCCG
ACGCCACCGCCGCAGCCGCCGCCGCCGCCGCCTCGGCGCCCGCCTCCCGGCGCTGACGGG
CTCGTACGAAGCCGGCGAGGGGGAACCCGCACCAGCGGTCGCCGGCACACCGCCCAGCAT
GGCCCGGGAAACCAGACACCTCTGGGTGGGCAACTTACCAGAGAATGTGCGGGAAGAGAA
GATCATCGAGCACTTCAAACGGACTGCACCTGTGGCATATGGCAAATCAGAGCTGTAACC
ACCAGCCTACGTCACGAGGAATCT------------------------------------
------------------------------------------------------------
GCCGTGTGGAAAGTGTCAAAATTCCCCCCAAGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGTCGGCTTCGGGTGTGTGGTGGCGGCAGAGCCGAGCTGCGAGGCCCGAGAGTCAGAA
CCTGGGGGAGAGGGATGGTCTCTGCACGGGGGGGAGCCGGAGGAGCCGCCGCCGCTGCCG
ACGCCACCGCCGCAGCCGCCGCCGCCGCCGCCTCGGCGCCCGCCTCCCGGCGCTGACGGG
CTCGTACGAAGCCGGCGAGGGGGAACCCGCACCAGCGGTCGCCGGCACACCGCCCAGCAT
GGCCCGGGAAACCAGACACCTCTGGGTGGGCAACTTACCAGAGAATGTGCGGGAAGAGAA
GATCATCGAGCACTTCAAACGGACTGCACCTGTGGCATATGGCAAATCAGAGCTGTAACC
ACCAGCCTACGTCACGAGGAATCT------------------------------------
------------------------------------------------------------
GCCGTGTGGAAAGTGTCAAAATTCCCCCCAAGAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-322, - strand, RNAz p=0.921278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-322, - strand, RNAz p=0.921278

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-322, gnl|bosTau2|chr11 (24261024-24260697)
               

               
               1-322, gnl|Hg17|chr1 (15919631-15919952)
               

               
               1-322, gnl|Mm7|chr4 (140916925-140916604)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-322, gnl|bosTau2|chr11 (24261024-24260697)
               

               
               1-322, gnl|Hg17|chr1 (15919631-15919952)
               

               
               1-322, gnl|Mm7|chr4 (140916925-140916604)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-322, gnl\|bosTau2\|chr11 (24261024-24260697)
	1-322, gnl\|Hg17\|chr1 (15919631-15919952)
	1-322, gnl\|Mm7\|chr4 (140916925-140916604)