Non-Coding RNA Search

Ss1.1-Ova1-OVRM10169H09.5

Sequence:


               
               GATATTCAGCAGTGGCCTGCGGCTGCCAGAGCAACTCCTCTGGGGAAATTAAGCTGCGAG
GCCGACTGCACTGCAGTTGCTCAGAAAAGCGCCCCGACCCCGCCTGCCGCGCACACCCGG
ATACCTGGGCTGCCCCGCGGCGGCTTGTACGAGAGCGCGGGAGAGGGAGAGCCAGAGTGT
GGGGCGCGCCGGGGCGTGAGCCCGAGCGGGTGCGGAGCGCACGGTACTACGGGGTGCGCG
CGGAGTGGGGCGAGCCCGGAGCGTCTACACCGGCCATGAGGGGCGCGGGCGCCTGGGCCC
CGCTCTGCTTGCTGCTGGCCGCCGCCGCCCAGCCCTCGCAGCCACAGCCCCCCGAGAGAC
CTGTTTTTACATGTGGCGGCATTCTTACCGGAGAGTCTGGATTTATTGGCAGCGAAGGTT
TTCCTGGAGTGTACCCTCCAAATAGCAAATGTACTTGGAAAATCACAGTTCCCGAGGGAA
AAGTAGTAGTTCTTAATTTCCGATTCATAGACCTGGAGAGTGACAACCTGTGTCGCTATG
ACTTTGTGGATGTATACAACGGCCACGCCAACGGCCAGCGCATTGGCCGTTTCTGCGGCA
CATTCCGGCCTGGAGCCCTCGTGTCCAGCGGCAACAAGATGATGGTGCAGATGATTTCTG
ACGCCAACACAGCTGGGAATGGCTTCATGGCCATGTTCACTGCCGCTGGTGTTTCTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATTCAGCAGTGGCCTGCGGCTGCCAGAGCAACTCCTCTGGGGAAATTAAGCTGCGAG
GCCGACTGCACTGCAGTTGCTCAGAAAAGCGCCCCGACCCCGCCTGCCGCGCACACCCGG
ATACCTGGGCTGCCCCGCGGCGGCTTGTACGAGAGCGCGGGAGAGGGAGAGCCAGAGTGT
GGGGCGCGCCGGGGCGTGAGCCCGAGCGGGTGCGGAGCGCACGGTACTACGGGGTGCGCG
CGGAGTGGGGCGAGCCCGGAGCGTCTACACCGGCCATGAGGGGCGCGGGCGCCTGGGCCC
CGCTCTGCTTGCTGCTGGCCGCCGCCGCCCAGCCCTCGCAGCCACAGCCCCCCGAGAGAC
CTGTTTTTACATGTGGCGGCATTCTTACCGGAGAGTCTGGATTTATTGGCAGCGAAGGTT
TTCCTGGAGTGTACCCTCCAAATAGCAAATGTACTTGGAAAATCACAGTTCCCGAGGGAA
AAGTAGTAGTTCTTAATTTCCGATTCATAGACCTGGAGAGTGACAACCTGTGTCGCTATG
ACTTTGTGGATGTATACAACGGCCACGCCAACGGCCAGCGCATTGGCCGTTTCTGCGGCA
CATTCCGGCCTGGAGCCCTCGTGTCCAGCGGCAACAAGATGATGGTGCAGATGATTTCTG
ACGCCAACACAGCTGGGAATGGCTTCATGGCCATGTTCACTGCCGCTGGTGTTTCTGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61887017|ref|XP_599138.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61887017|ref|XP_599138.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               468-706, gnl|bosTau2|chr1 (80442095-80442333)
               

               
               468-706, gnl|Hg17|chr3 (144050012-144049774)
               

               
               468-706, gnl|Mm7|chr9 (95315834-95316072)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               468-706, gnl|bosTau2|chr1 (80442095-80442333)
               

               
               468-706, gnl|Hg17|chr3 (144050012-144049774)
               

               
               468-706, gnl|Mm7|chr9 (95315834-95316072)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               jca (0.11396)

	468-706, gnl\|bosTau2\|chr1 (80442095-80442333)
	468-706, gnl\|Hg17\|chr3 (144050012-144049774)
	468-706, gnl\|Mm7\|chr9 (95315834-95316072)