Ss1.1-Ova1-OVRM10181C11.5
|
TTATATATATATACATATATATATATATATATCAAGTTTTAAATTATTGATAGCTCGTCT
GGATTACCAAAATCACTCTGCAGCCCTGCCCGCGGNTGGTAGGCCGCAACCCACTTCCAG
CCGCCTCCTGCTCCCCTTCAAGCCAACTATGCAGCCCACAAGAAGGCCCTGTGGGGCCCC
ATTGCCCAGCACTGTCCCATGGAAGGCTCTGGCAGCGTCCCTGGACCCCACGAGCACCGG
CCCCTTGACCATCTGGGGCTTGCCGTCACCGTGTTCTCTCCCCGCCGTCCCCACCGCACC
CTTCTGCCATCCTCTGGGAGAAGGAAACCAAAGGATCTAAAGGGGAGGGGCTCGCTCCAC
TCCCCTCTCCCCGTGCCCCTTACTCCCCAGCCCAGAAGGACGCTGCTCGTACCAGAAAAG
ACTATTGAAAGATGATTTATTTTATTTTTCTCAGACCTTTCCATCCTTGGGAAAATGGGG
GGGGAAAAAAAAGATAAAATCGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTATATATATATACATATATATATATATATATCAAGTTTTAAATTATTGATAGCTCGTCT
GGATTACCAAAATCACTCTGCAGCCCTGCCCGCGGNTGGTAGGCCGCAACCCACTTCCAG
CCGCCTCCTGCTCCCCTTCAAGCCAACTATGCAGCCCACAAGAAGGCCCTGTGGGGCCCC
ATTGCCCAGCACTGTCCCATGGAAGGCTCTGGCAGCGTCCCTGGACCCCACGAGCACCGG
CCCCTTGACCATCTGGGGCTTGCCGTCACCGTGTTCTCTCCCCGCCGTCCCCACCGCACC
CTTCTGCCATCCTCTGGGAGAAGGAAACCAAAGGATCTAAAGGGGAGGGGCTCGCTCCAC
TCCCCTCTCCCCGTGCCCCTTACTCCCCAGCCCAGAAGGACGCTGCTCGTACCAGAAAAG
ACTATTGAAAGATGATTTATTTTATTTTTCTCAGACCTTTCCATCCTTGGGAAAATGGGG
GGGGAAAAAAAAGATAAAATCGAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
343-459, - strand, RNAmicro p=0.983325 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
343-459, - strand, RNAmicro p=0.983325 |
|
174-408, BP457361 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP457361.1|), blast E-value=0, identity=99.57% |
|
48-408, DB801418 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB801418.1|), blast E-value=0, identity=98.89% |
|
111-408, DB805766 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB805766.1|), blast E-value=0, identity=98.99% |
|
41-339, hb18g05.g1 Canis cDNAs from testes cells Canis familiaris cDNA
(gb|BM540153.1|), blast E-value=0, identity=89.58% |
|
33-338, ip33g05.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris
(gb|CN005675.1|), blast E-value=0, identity=89.17% |
|
118-112, LB01731.CR.1_P02 GC_BGC-17 Bos taurus cDNA clone IMAGE
(gb|EE335079.1|), blast E-value=4e-29, identity=96.25% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
174-408, BP457361 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP457361.1|), blast E-value=0, identity=99.57% |
|
48-408, DB801418 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB801418.1|), blast E-value=0, identity=98.89% |
|
111-408, DB805766 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB805766.1|), blast E-value=0, identity=98.99% |
|
41-339, hb18g05.g1 Canis cDNAs from testes cells Canis familiaris cDNA
(gb|BM540153.1|), blast E-value=0, identity=89.58% |
|
33-338, ip33g05.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris
(gb|CN005675.1|), blast E-value=0, identity=89.17% |
|
118-112, LB01731.CR.1_P02 GC_BGC-17 Bos taurus cDNA clone IMAGE
(gb|EE335079.1|), blast E-value=4e-29, identity=96.25% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
ton (0.1755) |
|
ute (0.132784) |
|
ton (0.1755) |
|
ute (0.132784) |
