Non-Coding RNA Search

Ss1.1-Ova1-OVRM10181F05.5.5

Sequence:


               
               GCGTAACGAGACTTTACTGAAAACAGAACACCGGGCGAACCAAGGATTACAAACAGGAAT
GTGGACTGGTAGCAAAACAAAACAAAAAAATAAAAAGGGCGAGAGGAGGGGTTGTCGGAG
GGATAGGAGGGGGGAGCGAGAGCAAGAAAAGGGTTTTTTTTTTTTCTTCTTCCCATTTCT
TTAAAAAACCAACACAAGAAAACACACACACACACAACCAACGTTTGTTCCCGAGTAGAA
ACATAAATAGGGCAGAATCGAACACTCTGTTCTTCTCTCTTCCAAAGTCCAAAAAAAAAA
AAAAAAAAAGTAAAAGAAAAGGAAACGCAGGGCTTGAGGCTGCGCCCCCTTCGGCGGCGA
TGTGTACAAAGAGGCAGCCAGGACGCGCGGGTTTGTGCAACACCGGGTGGCCGCGCGCCG
AGGACAGAGGCAGCGCGAGGGCAGGGGAAAAGGAGGGGGGGTCATGCGCTCGCCCCCCCA
GGAGCAGGGGGTCCAGCTTGTCGAGTCTGAGGCGCCCTCTCCGAGTCCTGGCACCCTCGG
GGGGGGGGGTCCCCGGGGCCGCGCCCTCTCCAAGTCCCGGGAGCCCACGCCCCCCCCCCG
CAAACCCGCCTCTCTGGAAGGGGGCCGCGCATGCGCCCCGCGCGCGGGCTCAGTACGCCG
GCACCTGGTGCTGGGGCAGCAGCTGGCAGCCGCTGTTGACGTGGCTGAGGACCTTCTGCT
TGAGTTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGCTCCGTGTTCTGGC
TCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATACGCTCCAGCTTGCGCTTGCGGC
ACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTAATGCGCTCCTGAG
TGTCCATGTCGATGGGCGACAGCGGCGGGCTCTCGCCGAAGCTCGGCACGTCGGGCACCG
TCTGCGGCTCATCCTTGAGTGCGGCCAGGCGTGGCGGCCCCAGCGCGCCTGGGGGCGGCG
GCGGCGGCGGAAAGGGCACGGGTTCAGCGGCGAAGGCGACCGTCGCAGCTCCCCCCGAAC
CCCCAGTCCCTCCCGCGTAGCTGCTCAGGTTCGCGTAGACGGGCGCCTCGGGCGTGGCCG
CCGCTGGGGCCAGCTCGCTGGGAGGTGCGGCGCCTGCAGCCGTGCCTGAGGGTCCTCCGG
CGGCGGCGGCAGCGGAGGCCGCGCCCGCGCCCAGCTGGTTTTGCTTGTGCAAGTCCTCCA
GGGCCTTGACGAAGCCCTCGGCGAACTCCTGCTCCTCGCTTGCCGCCACCTTGGGGTAGA
GAAACTGCGTGCTCGTCGGCGTGGTGGTGACCAGCCCGTTGGACTGGATGATGAGACGTT
CGAGCTCGGGCGAAGCGAGCTTGAGCAGCCCCAGGTCGGGCGAAGGGAGCAGGCTGTCGG
GGGGCGCCGCACCCTGGGCGCCGTCGGTGCGCAGAGGGGCCGGGGGCGGTGCGGCCGCGG
GCTTGAGCGCCGCTGCCACCTGCTCGCTCAAGCTCAGCGTCAACGCGTCCTTCTTCATCA
TGCTGCCGGCGGCTGCCGTCGGGGGCGCCCCGGGGAACAGGCGACCCGGGGACGCGAAGC
TGCCACCGCCGCCACTGCCACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTAACGAGACTTTACTGAAAACAGAACACCGGGCGAACCAAGGATTACAAACAGGAAT
GTGGACTGGTAGCAAAACAAAACAAAAAAATAAAAAGGGCGAGAGGAGGGGTTGTCGGAG
GGATAGGAGGGGGGAGCGAGAGCAAGAAAAGGGTTTTTTTTTTTTCTTCTTCCCATTTCT
TTAAAAAACCAACACAAGAAAACACACACACACACAACCAACGTTTGTTCCCGAGTAGAA
ACATAAATAGGGCAGAATCGAACACTCTGTTCTTCTCTCTTCCAAAGTCCAAAAAAAAAA
AAAAAAAAAGTAAAAGAAAAGGAAACGCAGGGCTTGAGGCTGCGCCCCCTTCGGCGGCGA
TGTGTACAAAGAGGCAGCCAGGACGCGCGGGTTTGTGCAACACCGGGTGGCCGCGCGCCG
AGGACAGAGGCAGCGCGAGGGCAGGGGAAAAGGAGGGGGGGTCATGCGCTCGCCCCCCCA
GGAGCAGGGGGTCCAGCTTGTCGAGTCTGAGGCGCCCTCTCCGAGTCCTGGCACCCTCGG
GGGGGGGGGTCCCCGGGGCCGCGCCCTCTCCAAGTCCCGGGAGCCCACGCCCCCCCCCCG
CAAACCCGCCTCTCTGGAAGGGGGCCGCGCATGCGCCCCGCGCGCGGGCTCAGTACGCCG
GCACCTGGTGCTGGGGCAGCAGCTGGCAGCCGCTGTTGACGTGGCTGAGGACCTTCTGCT
TGAGTTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGCTCCGTGTTCTGGC
TCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATACGCTCCAGCTTGCGCTTGCGGC
ACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTAATGCGCTCCTGAG
TGTCCATGTCGATGGGCGACAGCGGCGGGCTCTCGCCGAAGCTCGGCACGTCGGGCACCG
TCTGCGGCTCATCCTTGAGTGCGGCCAGGCGTGGCGGCCCCAGCGCGCCTGGGGGCGGCG
GCGGCGGCGGAAAGGGCACGGGTTCAGCGGCGAAGGCGACCGTCGCAGCTCCCCCCGAAC
CCCCAGTCCCTCCCGCGTAGCTGCTCAGGTTCGCGTAGACGGGCGCCTCGGGCGTGGCCG
CCGCTGGGGCCAGCTCGCTGGGAGGTGCGGCGCCTGCAGCCGTGCCTGAGGGTCCTCCGG
CGGCGGCGGCAGCGGAGGCCGCGCCCGCGCCCAGCTGGTTTTGCTTGTGCAAGTCCTCCA
GGGCCTTGACGAAGCCCTCGGCGAACTCCTGCTCCTCGCTTGCCGCCACCTTGGGGTAGA
GAAACTGCGTGCTCGTCGGCGTGGTGGTGACCAGCCCGTTGGACTGGATGATGAGACGTT
CGAGCTCGGGCGAAGCGAGCTTGAGCAGCCCCAGGTCGGGCGAAGGGAGCAGGCTGTCGG
GGGGCGCCGCACCCTGGGCGCCGTCGGTGCGCAGAGGGGCCGGGGGCGGTGCGGCCGCGG
GCTTGAGCGCCGCTGCCACCTGCTCGCTCAAGCTCAGCGTCAACGCGTCCTTCTTCATCA
TGCTGCCGGCGGCTGCCGTCGGGGGCGCCCCGGGGAACAGGCGACCCGGGGACGCGAAGC
TGCCACCGCCGCCACTGCCACTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53EK9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53EK9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-396, - strand, RNAz p=0.605546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-396, - strand, RNAz p=0.605546

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005354, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005354, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1644, gnl|bosTau2|chr19 (51059671-51058001)
               

               
               4-1644, gnl|Hg17|chr19 (18251576-18253242)
               

               
               4-1644, gnl|Mm7|chr8 (69154671-69153183)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1644, gnl|bosTau2|chr19 (51059671-51058001)
               

               
               4-1644, gnl|Hg17|chr19 (18251576-18253242)
               

               
               4-1644, gnl|Mm7|chr8 (69154671-69153183)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               hyp (0.714184)
               

               
               pla (0.66836)
               

               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               cly (0.361925)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               eli (0.303628)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.714184)
               

               
               pla (0.66836)
               

               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               cly (0.361925)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               eli (0.303628)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	4-1644, gnl\|bosTau2\|chr19 (51059671-51058001)
	4-1644, gnl\|Hg17\|chr19 (18251576-18253242)
	4-1644, gnl\|Mm7\|chr8 (69154671-69153183)

	hyp (0.714184)
	pla (0.66836)
	fce (0.543183)
	fbs (0.526039)
	ece (0.45861)
	cag (0.453583)
	jej (0.395687)
	col (0.390016)
	cly (0.361925)
	nco (0.323468)
	csp (0.322373)
	eli (0.303628)
	jca (0.22792)
	fcc (0.197785)
	nlu (0.191681)
	nep (0.183925)
	mgm (0.180343)
	ill (0.175593)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	isp (0.150376)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)