Non-Coding RNA Search

Ss1.1-Ova1-OVRM10184E12.5

Sequence:


               
               CACCTGGAACCCTTTCGTGGAGAAAATAGTCTGGTATCTTTAATGTTTCTGTTCTCTTAC
TGTGCTGTTGGAAGGTTAATTGACTAGGTTAACTGTAGCATTAACCAGAAAGAGATGTTT
AATGTTTAAAATTTCCCCAGCAAGTATTGGAACTTCTAAAATATGTGTATCCTTTTTACA
GGGTTAAACTTGGAAATTATACTTGAAAACTTCATTATAATTATATCCTACTTTTCATTT
TAAGTTGGAAATCGTTTTTTGACAAAATTGATTTTGTATCATTGGGAAAGAAAAATGGTA
ATTGACATTCTTTTTTATTTTGGCTGTTATCCTTTGTTTTAGAGCAAAGAAATCACACTT
AGCCTCACTTTGTAGCTGCTTTCTTACTCCTTGCTAAGGTCTTTCAGAAAATCAGTGTGT
TTCCTTCTTAGGAAAGGATGAGTCCTGAATATATCCATCAAGAGAAAGCCAATCTCTGCC
CCTCACCTCCTTTTCCTTTATTGAGTTACCCTCTGTGCATGTGGTGTCTGTGCATGTGCA
CACGCCCGCAGCAGCAGCCCCTCCCTGGGGTCCCTGCCAGCATCCTGTGCCAGTTACCTT
TCAGTTCCGCCTGCGCCTGGCCTGCCTCTAGCCTGAGCCCTCTGGCTGCCCCACCCCCTG
CGATGTCTGTTCTGCGCCCCTCAGGCTTTCTTGTCTGGCCCACAGTTCCTGACCTAGGGC
TCTTATGTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTGGAACCCTTTCGTGGAGAAAATAGTCTGGTATCTTTAATGTTTCTGTTCTCTTAC
TGTGCTGTTGGAAGGTTAATTGACTAGGTTAACTGTAGCATTAACCAGAAAGAGATGTTT
AATGTTTAAAATTTCCCCAGCAAGTATTGGAACTTCTAAAATATGTGTATCCTTTTTACA
GGGTTAAACTTGGAAATTATACTTGAAAACTTCATTATAATTATATCCTACTTTTCATTT
TAAGTTGGAAATCGTTTTTTGACAAAATTGATTTTGTATCATTGGGAAAGAAAAATGGTA
ATTGACATTCTTTTTTATTTTGGCTGTTATCCTTTGTTTTAGAGCAAAGAAATCACACTT
AGCCTCACTTTGTAGCTGCTTTCTTACTCCTTGCTAAGGTCTTTCAGAAAATCAGTGTGT
TTCCTTCTTAGGAAAGGATGAGTCCTGAATATATCCATCAAGAGAAAGCCAATCTCTGCC
CCTCACCTCCTTTTCCTTTATTGAGTTACCCTCTGTGCATGTGGTGTCTGTGCATGTGCA
CACGCCCGCAGCAGCAGCCCCTCCCTGGGGTCCCTGCCAGCATCCTGTGCCAGTTACCTT
TCAGTTCCGCCTGCGCCTGGCCTGCCTCTAGCCTGAGCCCTCTGGCTGCCCCACCCCCTG
CGATGTCTGTTCTGCGCCCCTCAGGCTTTCTTGTCTGGCCCACAGTTCCTGACCTAGGGC
TCTTATGTTCAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-516, gnl|bosTau2|chr17 (23163443-23162922)
               

               
               1-516, gnl|Mm7|chr5 (109391219-109391693)
               


               
               549-731, gnl|bosTau2|chr17 (23162919-23162734)
               

               
               549-731, gnl|Mm7|chr5 (109391696-109391895)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr17 (23163443-23162922)
               

               
               1-516, gnl|Mm7|chr5 (109391219-109391693)
               


               
               549-731, gnl|bosTau2|chr17 (23162919-23162734)
               

               
               549-731, gnl|Mm7|chr5 (109391696-109391895)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eli (0.151814)

	1-516, gnl\|bosTau2\|chr17 (23163443-23162922)
	1-516, gnl\|Mm7\|chr5 (109391219-109391693)

	549-731, gnl\|bosTau2\|chr17 (23162919-23162734)
	549-731, gnl\|Mm7\|chr5 (109391696-109391895)