Ss1.1-Ova1-OVRM10185D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCGGCGCTGTTTAAAGATGGCGGCGGAGGAACCTCAGCAGCAGAAGCAGGAGCCGCT GGGCAGCGACTCTGAAGGTGTTAACTGTCTTGCCTATGATGAAGCCATCATGGCTCAGCA GGACCGAATTCAGCAAGAGATTGCTGTGCAGAACCCTCTGGTCTCGGAGCGACTGGAGCT CTCCGTCCTGTACAAAGAGTATGCCGAGGACGACAACATCTATCAACAGAAGATCAAGGA CCTCCACAAAAAGTACTCGTACATCCGCAAGACCAGGCCTGATGGAAACTGCTTCTATCG TGCTTTCGGTTTCTCCCACTTGGAGGCGTTGCTGGATGACAGCAAGGAGCTGCAGCGGTT CAAGGCTGTGTCTGCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACCGAATTCAC AATTGAGGATTTCCACAACACGTTCATGGACCTAATCGAGCAGGTGGAGAAGCAGACCTC AGTGGCCGACCTGCTGGCCTCCTTCAACGACCAGAGCACCTCGGACTACCTGGTGGTCTA CCTGCGGCTGCTCACCTCGGGCTACCTGCAGCGCGAGAGCAAGTTCTTCGAGCACTTCAT CGAGGGTGGGCGGACCGTCAAGGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGGA GAGCGACCACATCCACATCATCGCGCTGGCCCAGGCGCTCAGCGTCTCCATCCAGGTGGA GTACATGGACCGCGGCGAGGGCGGCACCACCAACCCCCACATCTTCCCCGAGGGCTCCGA GCCCAAGGTCTACCTTCTCTACCGGCCTGGACACTACGACATCCTCTACAAATAGGGCTG GCCCGGCCTGCCGCCGCCCTGCCTGCCCTCCCCTCTGCCAGGCACTAGACATGTACAGAG GTTTTTTTTGTGGTTGTAAATGGTCGTACTTCACCCCCCACGCCCTTCCCTGTCACACGA CCTTCCATGTTTTATTAAAGGGGACGCTGGTGGTGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCGGCGCTGTTTAAAGATGGCGGCGGAGGAACCTCAGCAGCAGAAGCAGGAGCCGCT GGGCAGCGACTCTGAAGGTGTTAACTGTCTTGCCTATGATGAAGCCATCATGGCTCAGCA GGACCGAATTCAGCAAGAGATTGCTGTGCAGAACCCTCTGGTCTCGGAGCGACTGGAGCT CTCCGTCCTGTACAAAGAGTATGCCGAGGACGACAACATCTATCAACAGAAGATCAAGGA CCTCCACAAAAAGTACTCGTACATCCGCAAGACCAGGCCTGATGGAAACTGCTTCTATCG TGCTTTCGGTTTCTCCCACTTGGAGGCGTTGCTGGATGACAGCAAGGAGCTGCAGCGGTT CAAGGCTGTGTCTGCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACCGAATTCAC AATTGAGGATTTCCACAACACGTTCATGGACCTAATCGAGCAGGTGGAGAAGCAGACCTC AGTGGCCGACCTGCTGGCCTCCTTCAACGACCAGAGCACCTCGGACTACCTGGTGGTCTA CCTGCGGCTGCTCACCTCGGGCTACCTGCAGCGCGAGAGCAAGTTCTTCGAGCACTTCAT CGAGGGTGGGCGGACCGTCAAGGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGGA GAGCGACCACATCCACATCATCGCGCTGGCCCAGGCGCTCAGCGTCTCCATCCAGGTGGA GTACATGGACCGCGGCGAGGGCGGCACCACCAACCCCCACATCTTCCCCGAGGGCTCCGA GCCCAAGGTCTACCTTCTCTACCGGCCTGGACACTACGACATCCTCTACAAATAGGGCTG GCCCGGCCTGCCGCCGCCCTGCCTGCCCTCCCCTCTGCCAGGCACTAGACATGTACAGAG GTTTTTTTTGTGGTTGTAAATGGTCGTACTTCACCCCCCACGCCCTTCCCTGTCACACGA CCTTCCATGTTTTATTAAAGGGGACGCTGGTGGTGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 709-828, - strand, RNAz p=0.665267 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 709-828, - strand, RNAz p=0.665267 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 10-843, gnl|bosTau2|chr27 (1642407-1643195) | |
| 10-843, gnl|Mm7|chr19 (7026130-7018876) | |
| 634-828, gnl|bosTau2|chr21 (39756654-39756463) | |
| 634-828, gnl|canFam2|chr8 (66150821-66151037) | |
| 634-828, gnl|danRer3|chr7 (16360641-16360839) | |
| 634-828, gnl|dasNov1|scaffold_117300 (5659-5443) | |
| 634-828, gnl|echTel1|scaffold_293606 (1912-2128) | |
| 634-828, gnl|fr1|chrUn (69974120-69974334) | |
| 634-828, gnl|hg17|chr14 (93581809-93582025) | |
| 634-828, gnl|Hg17|chr14 (93581811-93582002) | |
| 634-828, gnl|loxAfr1|scaffold_9695 (50126-49910) | |
| 634-828, gnl|mm7|chr12 (100899886-100900102) | |
| 634-828, gnl|Mm7|chr12 (100899889-100900079) | |
| 634-828, gnl|monDom2|scaffold_8 (33066478-33066693) | |
| 634-828, gnl|oryCun1|scaffold_164712 (3872-4088) | |
| 634-828, gnl|panTro1|chr15 (94027532-94027748) | |
| 634-828, gnl|rheMac2|chr7 (157261836-157262052) | |
| 634-828, gnl|rn3|chr6 (127699970-127700186) | |
| 634-828, gnl|tetNig1|chr10 (5339505-5339316) | |
| 634-828, gnl|xenTro1|scaffold_22 (3627359-3627568) | |
| 861-1007, gnl|bosTau2|chr27 (1643188-1643334) | |
| 861-1007, gnl|Hg17|chr11 (63521595-63521750) | |
| 861-1007, gnl|Mm7|chr19 (7018902-7018707) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-843, gnl|bosTau2|chr27 (1642407-1643195) | |
| 10-843, gnl|Mm7|chr19 (7026130-7018876) | |
| 634-828, gnl|bosTau2|chr21 (39756654-39756463) | |
| 634-828, gnl|canFam2|chr8 (66150821-66151037) | |
| 634-828, gnl|danRer3|chr7 (16360641-16360839) | |
| 634-828, gnl|dasNov1|scaffold_117300 (5659-5443) | |
| 634-828, gnl|echTel1|scaffold_293606 (1912-2128) | |
| 634-828, gnl|fr1|chrUn (69974120-69974334) | |
| 634-828, gnl|hg17|chr14 (93581809-93582025) | |
| 634-828, gnl|Hg17|chr14 (93581811-93582002) | |
| 634-828, gnl|loxAfr1|scaffold_9695 (50126-49910) | |
| 634-828, gnl|mm7|chr12 (100899886-100900102) | |
| 634-828, gnl|Mm7|chr12 (100899889-100900079) | |
| 634-828, gnl|monDom2|scaffold_8 (33066478-33066693) | |
| 634-828, gnl|oryCun1|scaffold_164712 (3872-4088) | |
| 634-828, gnl|panTro1|chr15 (94027532-94027748) | |
| 634-828, gnl|rheMac2|chr7 (157261836-157262052) | |
| 634-828, gnl|rn3|chr6 (127699970-127700186) | |
| 634-828, gnl|tetNig1|chr10 (5339505-5339316) | |
| 634-828, gnl|xenTro1|scaffold_22 (3627359-3627568) | |
| 861-1007, gnl|bosTau2|chr27 (1643188-1643334) | |
| 861-1007, gnl|Hg17|chr11 (63521595-63521750) | |
| 861-1007, gnl|Mm7|chr19 (7018902-7018707) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nco (0.485201) | |
| ebs (0.473205) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| duo (0.345602) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| clu (0.239292) | |
| col (0.195008) | |
| cag (0.151194) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.485201) | |
| ebs (0.473205) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| duo (0.345602) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| clu (0.239292) | |
| col (0.195008) | |
| cag (0.151194) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |