Non-Coding RNA Search

Ss1.1-Ova1-OVRM10186E04.5

Sequence:


               
               TATCAGTAATTCCTGCCCAGAAGACGTATTTATTTTTTTTAAGATAAAAACTCCATAAAC
AGGGAGTGGGAGAGACTAGTTTCCGCCCTAGCCCTCCTTCAGTGCGTCCCTGTGGGGGCG
CGGGGAGCATGAGTGGCCCGGGACCCACCGTCAGGACTCCTCGCAAGTAAACCTCAGTGC
CTGAGACTCTCCTGCCAAGCCGCACGACGGTGCCAGCTGCGGACTGGGTGGTCGAGTAGG
CCCCCACCCCCCCGGGCGGCCGGTGCCACTGATCAGGCCTGCAGGGGGTGAGCTGGGTGC
CCAGGCAGGACCAGAAGCTCTGGGGCCCTGGCCTCTGGCATGGCGACTTGGCCAGGAGGC
CAGGTGAGGGAGTAGGAGCTTGTTGTGAGGGCCGCGTGGGACCGCCACCAGCACACCGGA
AGGTGGGTGCCGGGCTGAGGTGTGGGTCCAGGCCGTCCCAGGACAAGGCTGCAGTCAGGC
CCTGCGCGTGTTCTGGGGTCCCTGGTTCCCTCTGGCTGGGCTCAGGTCCGACCCTTCCCC
AGGGAGCTGTGGGCGCCCTGCTGCCTCTTTGCCTTAACAAGAGTCGTAGCTCCAAGCTGC
ACGACATGCATCTGTGGGAGGCTGGCCCAGACACGAGCTGCTTGGGGACTCCGTGTCTGT
GTCTTGGGGGCGAGAGGCAAGCCTGTGTGACCCTCCCTCACCCTTGGTGGGTGTGTTCAC
CATGGCGGGGGCCGTGCCTGGCGCCTCCAGGAGGTGGGTCACCTGGCGTGGGTCTGGCTG
TAGCAGAGGGTCTGTCCTGCAGGGCAGGAGATGCAGAGCAGCCGCTCTCTCCAGCTCACG
TGCAGCCACCACCAAGAAGCAGTGGGGACCGGCTGCTCCTGCTGCTGGCAGCCGCCCCGT
GGCACTCTGGGCTGTGTCCTTGGCTCCTCGGATGGGCTGTGAGGCTGCAGGGGGGTGGGA
GGGCACTAGCCTCAGACTCGCAGCCCCCGTTCCTCCTCTGCTGGCTCTGTCTTTATCCAC
GGAGCTGGTGTCCTTTTCTCTTCAACCTGTATTCGCCTCACCCTGACCTTCTGGCATCTG
CATAGTTGGTTTCCTTTTGTCTTTTAGCTAAAGAAAAAGTACTGTGATTTCTTTGCTTCT
GGTTTCGAGTCACTCTTTGTTCAGTAATGCACTTTATTTTATTGTCCAAAGAGTCAGGGC
TCAGCCTGAGGGGTGGGAAGCAGCCTGCCACCAGGCCCAGGCCCGGGCAGCTCAGCCACC
TCCTGGTGCACGGAGCAGAGGCCCCCAGCCCCACCTGCATCCTCCCTGCCCTTGCGTGGA
CGTACCCTCTCAGGCCACCAGGCACCATAACCCAGTGGCGGGCGGGGGGCAGTCGGGTGC
CGGCCTCTGCCACCCAGCCTACTCCCGGTGCTCCCGCTTGGGGCTTGCAGCTGTGCCTTG
GTTGGGTTCACAGTAGCGTTGCCTGGACTCCAGCCCTGCAGTGGAACCAATAAAAGTACC
TGAAGCGACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCAGTAATTCCTGCCCAGAAGACGTATTTATTTTTTTTAAGATAAAAACTCCATAAAC
AGGGAGTGGGAGAGACTAGTTTCCGCCCTAGCCCTCCTTCAGTGCGTCCCTGTGGGGGCG
CGGGGAGCATGAGTGGCCCGGGACCCACCGTCAGGACTCCTCGCAAGTAAACCTCAGTGC
CTGAGACTCTCCTGCCAAGCCGCACGACGGTGCCAGCTGCGGACTGGGTGGTCGAGTAGG
CCCCCACCCCCCCGGGCGGCCGGTGCCACTGATCAGGCCTGCAGGGGGTGAGCTGGGTGC
CCAGGCAGGACCAGAAGCTCTGGGGCCCTGGCCTCTGGCATGGCGACTTGGCCAGGAGGC
CAGGTGAGGGAGTAGGAGCTTGTTGTGAGGGCCGCGTGGGACCGCCACCAGCACACCGGA
AGGTGGGTGCCGGGCTGAGGTGTGGGTCCAGGCCGTCCCAGGACAAGGCTGCAGTCAGGC
CCTGCGCGTGTTCTGGGGTCCCTGGTTCCCTCTGGCTGGGCTCAGGTCCGACCCTTCCCC
AGGGAGCTGTGGGCGCCCTGCTGCCTCTTTGCCTTAACAAGAGTCGTAGCTCCAAGCTGC
ACGACATGCATCTGTGGGAGGCTGGCCCAGACACGAGCTGCTTGGGGACTCCGTGTCTGT
GTCTTGGGGGCGAGAGGCAAGCCTGTGTGACCCTCCCTCACCCTTGGTGGGTGTGTTCAC
CATGGCGGGGGCCGTGCCTGGCGCCTCCAGGAGGTGGGTCACCTGGCGTGGGTCTGGCTG
TAGCAGAGGGTCTGTCCTGCAGGGCAGGAGATGCAGAGCAGCCGCTCTCTCCAGCTCACG
TGCAGCCACCACCAAGAAGCAGTGGGGACCGGCTGCTCCTGCTGCTGGCAGCCGCCCCGT
GGCACTCTGGGCTGTGTCCTTGGCTCCTCGGATGGGCTGTGAGGCTGCAGGGGGGTGGGA
GGGCACTAGCCTCAGACTCGCAGCCCCCGTTCCTCCTCTGCTGGCTCTGTCTTTATCCAC
GGAGCTGGTGTCCTTTTCTCTTCAACCTGTATTCGCCTCACCCTGACCTTCTGGCATCTG
CATAGTTGGTTTCCTTTTGTCTTTTAGCTAAAGAAAAAGTACTGTGATTTCTTTGCTTCT
GGTTTCGAGTCACTCTTTGTTCAGTAATGCACTTTATTTTATTGTCCAAAGAGTCAGGGC
TCAGCCTGAGGGGTGGGAAGCAGCCTGCCACCAGGCCCAGGCCCGGGCAGCTCAGCCACC
TCCTGGTGCACGGAGCAGAGGCCCCCAGCCCCACCTGCATCCTCCCTGCCCTTGCGTGGA
CGTACCCTCTCAGGCCACCAGGCACCATAACCCAGTGGCGGGCGGGGGGCAGTCGGGTGC
CGGCCTCTGCCACCCAGCCTACTCCCGGTGCTCCCGCTTGGGGCTTGCAGCTGTGCCTTG
GTTGGGTTCACAGTAGCGTTGCCTGGACTCCAGCCCTGCAGTGGAACCAATAAAAGTACC
TGAAGCGACAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1409-1509, - strand, RNAz p=0.939543

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1409-1509, - strand, RNAz p=0.939543

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_017921, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017921, -

Aligned organism(s): 23 entry(ies)

More info

Aligned organism(s): 23 entry(ies)

Help | Less info


               
               2-224, gnl|bosTau2|chr19 (45194587-45194359)
               

               
               2-224, gnl|Hg17|chr17 (77136096-77135867)
               

               
               2-224, gnl|Mm7|chr11 (120490980-120490784)
               


               
               326-707, gnl|bosTau2|chr19 (45194194-45193813)
               

               
               326-707, gnl|canFam2|chr9 (3594043-3593428)
               

               
               326-707, gnl|hg17|chr17 (77134964-77135646)
               

               
               326-707, gnl|Hg17|chr17 (77135730-77135398)
               

               
               326-707, gnl|loxAfr1|scaffold_10312 (6783-7269)
               

               
               326-707, gnl|mm7|chr11 (120489957-120490578)
               

               
               326-707, gnl|panTro1|chr19 (80869221-80869903)
               

               
               326-707, gnl|rheMac2|chr16 (77014862-77015546)
               

               
               326-707, gnl|rn3|chr10 (109823745-109824376)
               


               
               906-1509, gnl|bosTau2|chr19 (45193626-45193044)
               

               
               906-1509, gnl|canFam2|chr9 (3594580-3594164)
               

               
               906-1509, gnl|hg17|chr17 (77134277-77134822)
               

               
               906-1509, gnl|Hg17|chr17 (77135108-77134356)
               

               
               906-1509, gnl|loxAfr1|scaffold_10312 (6247-6659)
               

               
               906-1509, gnl|mm7|chr11 (120489342-120489852)
               

               
               906-1509, gnl|Mm7|chr11 (120490120-120489415)
               

               
               906-1509, gnl|monDom2|scaffold_18 (14176692-14177360)
               

               
               906-1509, gnl|panTro1|chr19 (80868534-80869079)
               

               
               906-1509, gnl|rheMac2|chr16 (77014171-77014717)
               

               
               906-1509, gnl|rn3|chr10 (109823152-109823637)

Aligned organism(s): 23 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-224, gnl|bosTau2|chr19 (45194587-45194359)
               

               
               2-224, gnl|Hg17|chr17 (77136096-77135867)
               

               
               2-224, gnl|Mm7|chr11 (120490980-120490784)
               


               
               326-707, gnl|bosTau2|chr19 (45194194-45193813)
               

               
               326-707, gnl|canFam2|chr9 (3594043-3593428)
               

               
               326-707, gnl|hg17|chr17 (77134964-77135646)
               

               
               326-707, gnl|Hg17|chr17 (77135730-77135398)
               

               
               326-707, gnl|loxAfr1|scaffold_10312 (6783-7269)
               

               
               326-707, gnl|mm7|chr11 (120489957-120490578)
               

               
               326-707, gnl|panTro1|chr19 (80869221-80869903)
               

               
               326-707, gnl|rheMac2|chr16 (77014862-77015546)
               

               
               326-707, gnl|rn3|chr10 (109823745-109824376)
               


               
               906-1509, gnl|bosTau2|chr19 (45193626-45193044)
               

               
               906-1509, gnl|canFam2|chr9 (3594580-3594164)
               

               
               906-1509, gnl|hg17|chr17 (77134277-77134822)
               

               
               906-1509, gnl|Hg17|chr17 (77135108-77134356)
               

               
               906-1509, gnl|loxAfr1|scaffold_10312 (6247-6659)
               

               
               906-1509, gnl|mm7|chr11 (120489342-120489852)
               

               
               906-1509, gnl|Mm7|chr11 (120490120-120489415)
               

               
               906-1509, gnl|monDom2|scaffold_18 (14176692-14177360)
               

               
               906-1509, gnl|panTro1|chr19 (80868534-80869079)
               

               
               906-1509, gnl|rheMac2|chr16 (77014171-77014717)
               

               
               906-1509, gnl|rn3|chr10 (109823152-109823637)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	2-224, gnl\|bosTau2\|chr19 (45194587-45194359)
	2-224, gnl\|Hg17\|chr17 (77136096-77135867)
	2-224, gnl\|Mm7\|chr11 (120490980-120490784)

	326-707, gnl\|bosTau2\|chr19 (45194194-45193813)
	326-707, gnl\|canFam2\|chr9 (3594043-3593428)
	326-707, gnl\|hg17\|chr17 (77134964-77135646)
	326-707, gnl\|Hg17\|chr17 (77135730-77135398)
	326-707, gnl\|loxAfr1\|scaffold_10312 (6783-7269)
	326-707, gnl\|mm7\|chr11 (120489957-120490578)
	326-707, gnl\|panTro1\|chr19 (80869221-80869903)
	326-707, gnl\|rheMac2\|chr16 (77014862-77015546)
	326-707, gnl\|rn3\|chr10 (109823745-109824376)

	906-1509, gnl\|bosTau2\|chr19 (45193626-45193044)
	906-1509, gnl\|canFam2\|chr9 (3594580-3594164)
	906-1509, gnl\|hg17\|chr17 (77134277-77134822)
	906-1509, gnl\|Hg17\|chr17 (77135108-77134356)
	906-1509, gnl\|loxAfr1\|scaffold_10312 (6247-6659)
	906-1509, gnl\|mm7\|chr11 (120489342-120489852)
	906-1509, gnl\|Mm7\|chr11 (120490120-120489415)
	906-1509, gnl\|monDom2\|scaffold_18 (14176692-14177360)
	906-1509, gnl\|panTro1\|chr19 (80868534-80869079)
	906-1509, gnl\|rheMac2\|chr16 (77014171-77014717)
	906-1509, gnl\|rn3\|chr10 (109823152-109823637)

	ill (0.175593)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	cov (0.132153)
	jca (0.11396)