Ss1.1-Ova1-OVRM10186H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAAAATTAATTTTTGAGTTAAATATTTGGAATATAAAGAAGGGAAGGTGACTGAAAAT GGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTT TACAAAGAGAAAGTTTGGACTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTG TGAAATAGCACTCATCATTTTCAACAGCTCTAACAAACTGTTTCAGTATGCCAGCACTGA TATGGACAAAGTTCTTCTCAAGTATACAGAATATAATGAACCTCACGAGAGCAGAACCAA CTCGGATATTGTTGAGACTTTAAGAAAGAAAGGCCTTAATGGTTGTGAGAGCCCTGATGC TGACGATTACTTTGAGCACAGTCCACTCTCGGAGGACAGATTCAGCAAACTAAATGAAGA TAGTGATTTTATTTTCAAACGAGGCCCTCCCGGTTTGCCACCTCAAAACTTCTCAATGTC TGTCACAGTCCCTGTGACCAGCCCTAATGCTTTGTCCTACACTAACCCAGGGAGTTCACT TGTGTCCCCGTCTTTGGCAGCCAGCTCAACATTAGCAGATTCAAGCATGCTCTCTCCACC TCAAGCCACATTACATAGAAATGTATCCCCTGGAGCCCCTCAGAGACCACCAAGTACTGG CAGTGCAGGTGGGATGTTGAGCACTTCAGACCTCACGGTGCCAAATGGAGCTGGAAGCAG CCCAGTGGGTGGTGGCAATCTTGGAATGAACAGTCGGAAACCAGATCTTCGCGTTGTCAT CCCCCCTTCAAGCAAGGGCATGATGCCTCCACTGTCGGAGGAAGAGGAATTGGAGTTGAA TACCCAGAGGATAAGCAGTTCTCAAGCCCCCCAGCCCCTAGCTACCCCAGTGGTGTCTGT GACCACCCCAAGTCTGCCTCAGCAAGGGCTGGTGTACTCAGCAATGCCAACCGCCTACAA CACCGATTACTCACTGACTAGTGCAGACCTGTCAGCCCTGCAGGGCTTCAACTCCCCAGG AATGCTGTCTCTGGGACAGGTGTCAGCCTGGCAGCAGCACCATTTANG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAAAATTAATTTTTGAGTTAAATATTTGGAATATAAAGAAGGGAAGGTGACTGAAAAT GGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTT TACAAAGAGAAAGTTTGGACTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTG TGAAATAGCACTCATCATTTTCAACAGCTCTAACAAACTGTTTCAGTATGCCAGCACTGA TATGGACAAAGTTCTTCTCAAGTATACAGAATATAATGAACCTCACGAGAGCAGAACCAA CTCGGATATTGTTGAGACTTTAAGAAAGAAAGGCCTTAATGGTTGTGAGAGCCCTGATGC TGACGATTACTTTGAGCACAGTCCACTCTCGGAGGACAGATTCAGCAAACTAAATGAAGA TAGTGATTTTATTTTCAAACGAGGCCCTCCCGGTTTGCCACCTCAAAACTTCTCAATGTC TGTCACAGTCCCTGTGACCAGCCCTAATGCTTTGTCCTACACTAACCCAGGGAGTTCACT TGTGTCCCCGTCTTTGGCAGCCAGCTCAACATTAGCAGATTCAAGCATGCTCTCTCCACC TCAAGCCACATTACATAGAAATGTATCCCCTGGAGCCCCTCAGAGACCACCAAGTACTGG CAGTGCAGGTGGGATGTTGAGCACTTCAGACCTCACGGTGCCAAATGGAGCTGGAAGCAG CCCAGTGGGTGGTGGCAATCTTGGAATGAACAGTCGGAAACCAGATCTTCGCGTTGTCAT CCCCCCTTCAAGCAAGGGCATGATGCCTCCACTGTCGGAGGAAGAGGAATTGGAGTTGAA TACCCAGAGGATAAGCAGTTCTCAAGCCCCCCAGCCCCTAGCTACCCCAGTGGTGTCTGT GACCACCCCAAGTCTGCCTCAGCAAGGGCTGGTGTACTCAGCAATGCCAACCGCCTACAA CACCGATTACTCACTGACTAGTGCAGACCTGTCAGCCCTGCAGGGCTTCAACTCCCCAGG AATGCTGTCTCTGGGACAGGTGTCAGCCTGGCAGCAGCACCATTTANG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 449-567, - strand, RNAz p=0.565733 | |
| 965-1068, + strand, RNAz p=0.719484 | |
| 965-1068, - strand, RNAz p=0.719484 | |
| 965-1065, + strand, RNAz p=0.813921 | |
| 965-1065, - strand, RNAz p=0.813921 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 449-567, - strand, RNAz p=0.565733 | |
| 965-1068, + strand, RNAz p=0.719484 | |
| 965-1068, - strand, RNAz p=0.719484 | |
| 965-1065, + strand, RNAz p=0.813921 | |
| 965-1065, - strand, RNAz p=0.813921 |
| Aligned organism(s): 91 entry(ies) | More info |
| Aligned organism(s): 91 entry(ies) | Help | Less info |
| 111-316, gnl|bosTau2|chr21 (4639652-4639857) | |
| 111-316, gnl|canFam2|chr3 (43937089-43937282) | |
| 111-316, gnl|canFam2|chr3 (43937318-43937076) | |
| 111-316, gnl|danRer3|chr18 (28030091-28030289) | |
| 111-316, gnl|danRer3|chr18 (28030315-28030080) | |
| 111-316, gnl|dasNov1|scaffold_47448 (9811-10006) | |
| 111-316, gnl|dasNov1|scaffold_47448 (10037-9798) | |
| 111-316, gnl|echTel1|scaffold_310139 (136234-136430) | |
| 111-316, gnl|echTel1|scaffold_310139 (136463-136221) | |
| 111-316, gnl|fr1|chrUn (31261918-31261720) | |
| 111-316, gnl|fr1|chrUn (31261708-31261929) | |
| 111-316, gnl|galGal2|chr10 (17904271-17904469) | |
| 111-316, gnl|galGal2|chr10 (17904496-17904260) | |
| 111-316, gnl|hg17|chr1 (176148996-176149181) | |
| 111-316, gnl|hg17|chr15 (98003261-98003497) | |
| 111-316, gnl|Hg17|chr15 (98003287-98003492) | |
| 111-316, gnl|loxAfr1|scaffold_7744 (39822-39629) | |
| 111-316, gnl|loxAfr1|scaffold_7744 (39597-39835) | |
| 111-316, gnl|mm7|chr3 (88270320-88270122) | |
| 111-316, gnl|mm7|chr7 (63157023-63156788) | |
| 111-316, gnl|Mm7|chr7 (63156996-63156791) | |
| 111-316, gnl|monDom2|scaffold_12 (61128168-61128366) | |
| 111-316, gnl|monDom2|scaffold_12 (61128402-61128157) | |
| 111-316, gnl|oryCun1|scaffold_199193 (3495-3693) | |
| 111-316, gnl|oryCun1|scaffold_199193 (3728-3484) | |
| 111-316, gnl|panTro1|chr1 (158543769-158543952) | |
| 111-316, gnl|panTro1|chr16 (99073910-99074147) | |
| 111-316, gnl|rheMac2|chr1 (191278783-191278598) | |
| 111-316, gnl|rheMac2|chr7 (79678810-79679046) | |
| 111-316, gnl|rn3|chr2 (12124371-12124176) | |
| 111-316, gnl|rn3|chr2 (12124149-12124382) | |
| 111-316, gnl|tetNig1|chr13 (2967588-2967786) | |
| 111-316, gnl|tetNig1|chr13 (2967788-2967577) | |
| 111-316, gnl|xenTro1|scaffold_208 (1539795-1539993) | |
| 111-316, gnl|xenTro1|scaffold_208 (1540005-1539784) | |
| 449-670, gnl|bosTau2|chr21 (4663209-4663430) | |
| 449-670, gnl|canFam2|chr3 (43902503-43902322) | |
| 449-670, gnl|danRer3|chr18 (27986874-27986700) | |
| 449-670, gnl|dasNov1|scaffold_30538 (993-812) | |
| 449-670, gnl|echTel1|scaffold_310139 (103565-103379) | |
| 449-670, gnl|fr1|chrUn (31274521-31274695) | |
| 449-670, gnl|galGal2|chr10 (17885179-17884998) | |
| 449-670, gnl|hg17|chr15 (98032117-98032298) | |
| 449-670, gnl|Hg17|chr15 (98032121-98032342) | |
| 449-670, gnl|mm7|chr7 (63127584-63127403) | |
| 449-670, gnl|Mm7|chr7 (63127578-63127357) | |
| 449-670, gnl|monDom2|scaffold_12 (61092840-61092659) | |
| 449-670, gnl|oryCun1|scaffold_214139 (105364-105217) | |
| 449-670, gnl|panTro1|chr16 (99102747-99102928) | |
| 449-670, gnl|rheMac2|chr7 (79707235-79707416) | |
| 449-670, gnl|rn3|chr2 (12165962-12166110) | |
| 449-670, gnl|tetNig1|chr13 (2954189-2954015) | |
| 449-670, gnl|xenTro1|scaffold_208 (1525449-1525268) | |
| 838-963, gnl|bosTau2|chr21 (4698278-4698403) | |
| 838-963, gnl|canFam2|chr3 (43878254-43878115) | |
| 838-963, gnl|danRer3|chr18 (27954108-27953972) | |
| 838-963, gnl|dasNov1|scaffold_146097 (3411-3550) | |
| 838-963, gnl|echTel1|scaffold_310139 (77702-77563) | |
| 838-963, gnl|fr1|chrUn (31281872-31282014) | |
| 838-963, gnl|galGal2|chr10 (17868566-17868431) | |
| 838-963, gnl|hg17|chr15 (98064454-98064593) | |
| 838-963, gnl|Hg17|chr15 (98064456-98064581) | |
| 838-963, gnl|loxAfr1|scaffold_3048 (106605-106466) | |
| 838-963, gnl|mm7|chr7 (63101861-63101723) | |
| 838-963, gnl|Mm7|chr7 (63101857-63101732) | |
| 838-963, gnl|monDom2|scaffold_12 (61059860-61059725) | |
| 838-963, gnl|oryCun1|scaffold_179378 (94-233) | |
| 838-963, gnl|panTro1|chr16 (99135175-99135314) | |
| 838-963, gnl|rheMac2|chr7 (79746636-79746775) | |
| 838-963, gnl|rn3|chr2 (180191604-180191742) | |
| 838-963, gnl|tetNig1|chr13 (2946853-2946711) | |
| 838-963, gnl|xenTro1|scaffold_208 (1511884-1511752) | |
| 965-1068, gnl|bosTau2|chr21 (4702204-4702307) | |
| 965-1068, gnl|canFam2|chr3 (43874612-43874432) | |
| 965-1068, gnl|danRer3|chr18 (27951799-27951654) | |
| 965-1068, gnl|dasNov1|scaffold_118592 (176-331) | |
| 965-1068, gnl|echTel1|scaffold_310139 (71311-71138) | |
| 965-1068, gnl|fr1|chrUn (31282140-31282285) | |
| 965-1068, gnl|galGal2|chr10 (17864448-17864284) | |
| 965-1068, gnl|hg17|chr15 (98068321-98068500) | |
| 965-1068, gnl|Hg17|chr15 (98068361-98068464) | |
| 965-1068, gnl|loxAfr1|scaffold_3048 (101718-101538) | |
| 965-1068, gnl|mm7|chr7 (63098080-63097931) | |
| 965-1068, gnl|Mm7|chr7 (63098068-63097965) | |
| 965-1068, gnl|monDom2|scaffold_12 (61045372-61045195) | |
| 965-1068, gnl|oryCun1|scaffold_187327 (1717-1894) | |
| 965-1068, gnl|panTro1|chr16 (99139090-99139269) | |
| 965-1068, gnl|rheMac2|chr7 (79750515-79750694) | |
| 965-1068, gnl|rn3|chr2 (12257657-12257513) | |
| 965-1068, gnl|tetNig1|chr13 (2946584-2946445) | |
| 965-1068, gnl|xenTro1|scaffold_208 (1510250-1510095) |
| Aligned organism(s): 91 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-316, gnl|bosTau2|chr21 (4639652-4639857) | |
| 111-316, gnl|canFam2|chr3 (43937089-43937282) | |
| 111-316, gnl|canFam2|chr3 (43937318-43937076) | |
| 111-316, gnl|danRer3|chr18 (28030091-28030289) | |
| 111-316, gnl|danRer3|chr18 (28030315-28030080) | |
| 111-316, gnl|dasNov1|scaffold_47448 (9811-10006) | |
| 111-316, gnl|dasNov1|scaffold_47448 (10037-9798) | |
| 111-316, gnl|echTel1|scaffold_310139 (136234-136430) | |
| 111-316, gnl|echTel1|scaffold_310139 (136463-136221) | |
| 111-316, gnl|fr1|chrUn (31261918-31261720) | |
| 111-316, gnl|fr1|chrUn (31261708-31261929) | |
| 111-316, gnl|galGal2|chr10 (17904271-17904469) | |
| 111-316, gnl|galGal2|chr10 (17904496-17904260) | |
| 111-316, gnl|hg17|chr1 (176148996-176149181) | |
| 111-316, gnl|hg17|chr15 (98003261-98003497) | |
| 111-316, gnl|Hg17|chr15 (98003287-98003492) | |
| 111-316, gnl|loxAfr1|scaffold_7744 (39822-39629) | |
| 111-316, gnl|loxAfr1|scaffold_7744 (39597-39835) | |
| 111-316, gnl|mm7|chr3 (88270320-88270122) | |
| 111-316, gnl|mm7|chr7 (63157023-63156788) | |
| 111-316, gnl|Mm7|chr7 (63156996-63156791) | |
| 111-316, gnl|monDom2|scaffold_12 (61128168-61128366) | |
| 111-316, gnl|monDom2|scaffold_12 (61128402-61128157) | |
| 111-316, gnl|oryCun1|scaffold_199193 (3495-3693) | |
| 111-316, gnl|oryCun1|scaffold_199193 (3728-3484) | |
| 111-316, gnl|panTro1|chr1 (158543769-158543952) | |
| 111-316, gnl|panTro1|chr16 (99073910-99074147) | |
| 111-316, gnl|rheMac2|chr1 (191278783-191278598) | |
| 111-316, gnl|rheMac2|chr7 (79678810-79679046) | |
| 111-316, gnl|rn3|chr2 (12124371-12124176) | |
| 111-316, gnl|rn3|chr2 (12124149-12124382) | |
| 111-316, gnl|tetNig1|chr13 (2967588-2967786) | |
| 111-316, gnl|tetNig1|chr13 (2967788-2967577) | |
| 111-316, gnl|xenTro1|scaffold_208 (1539795-1539993) | |
| 111-316, gnl|xenTro1|scaffold_208 (1540005-1539784) | |
| 449-670, gnl|bosTau2|chr21 (4663209-4663430) | |
| 449-670, gnl|canFam2|chr3 (43902503-43902322) | |
| 449-670, gnl|danRer3|chr18 (27986874-27986700) | |
| 449-670, gnl|dasNov1|scaffold_30538 (993-812) | |
| 449-670, gnl|echTel1|scaffold_310139 (103565-103379) | |
| 449-670, gnl|fr1|chrUn (31274521-31274695) | |
| 449-670, gnl|galGal2|chr10 (17885179-17884998) | |
| 449-670, gnl|hg17|chr15 (98032117-98032298) | |
| 449-670, gnl|Hg17|chr15 (98032121-98032342) | |
| 449-670, gnl|mm7|chr7 (63127584-63127403) | |
| 449-670, gnl|Mm7|chr7 (63127578-63127357) | |
| 449-670, gnl|monDom2|scaffold_12 (61092840-61092659) | |
| 449-670, gnl|oryCun1|scaffold_214139 (105364-105217) | |
| 449-670, gnl|panTro1|chr16 (99102747-99102928) | |
| 449-670, gnl|rheMac2|chr7 (79707235-79707416) | |
| 449-670, gnl|rn3|chr2 (12165962-12166110) | |
| 449-670, gnl|tetNig1|chr13 (2954189-2954015) | |
| 449-670, gnl|xenTro1|scaffold_208 (1525449-1525268) | |
| 838-963, gnl|bosTau2|chr21 (4698278-4698403) | |
| 838-963, gnl|canFam2|chr3 (43878254-43878115) | |
| 838-963, gnl|danRer3|chr18 (27954108-27953972) | |
| 838-963, gnl|dasNov1|scaffold_146097 (3411-3550) | |
| 838-963, gnl|echTel1|scaffold_310139 (77702-77563) | |
| 838-963, gnl|fr1|chrUn (31281872-31282014) | |
| 838-963, gnl|galGal2|chr10 (17868566-17868431) | |
| 838-963, gnl|hg17|chr15 (98064454-98064593) | |
| 838-963, gnl|Hg17|chr15 (98064456-98064581) | |
| 838-963, gnl|loxAfr1|scaffold_3048 (106605-106466) | |
| 838-963, gnl|mm7|chr7 (63101861-63101723) | |
| 838-963, gnl|Mm7|chr7 (63101857-63101732) | |
| 838-963, gnl|monDom2|scaffold_12 (61059860-61059725) | |
| 838-963, gnl|oryCun1|scaffold_179378 (94-233) | |
| 838-963, gnl|panTro1|chr16 (99135175-99135314) | |
| 838-963, gnl|rheMac2|chr7 (79746636-79746775) | |
| 838-963, gnl|rn3|chr2 (180191604-180191742) | |
| 838-963, gnl|tetNig1|chr13 (2946853-2946711) | |
| 838-963, gnl|xenTro1|scaffold_208 (1511884-1511752) | |
| 965-1068, gnl|bosTau2|chr21 (4702204-4702307) | |
| 965-1068, gnl|canFam2|chr3 (43874612-43874432) | |
| 965-1068, gnl|danRer3|chr18 (27951799-27951654) | |
| 965-1068, gnl|dasNov1|scaffold_118592 (176-331) | |
| 965-1068, gnl|echTel1|scaffold_310139 (71311-71138) | |
| 965-1068, gnl|fr1|chrUn (31282140-31282285) | |
| 965-1068, gnl|galGal2|chr10 (17864448-17864284) | |
| 965-1068, gnl|hg17|chr15 (98068321-98068500) | |
| 965-1068, gnl|Hg17|chr15 (98068361-98068464) | |
| 965-1068, gnl|loxAfr1|scaffold_3048 (101718-101538) | |
| 965-1068, gnl|mm7|chr7 (63098080-63097931) | |
| 965-1068, gnl|Mm7|chr7 (63098068-63097965) | |
| 965-1068, gnl|monDom2|scaffold_12 (61045372-61045195) | |
| 965-1068, gnl|oryCun1|scaffold_187327 (1717-1894) | |
| 965-1068, gnl|panTro1|chr16 (99139090-99139269) | |
| 965-1068, gnl|rheMac2|chr7 (79750515-79750694) | |
| 965-1068, gnl|rn3|chr2 (12257657-12257513) | |
| 965-1068, gnl|tetNig1|chr13 (2946584-2946445) | |
| 965-1068, gnl|xenTro1|scaffold_208 (1510250-1510095) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) | |
| med (0.116252) |