Ss1.1-Ova1-OVRM10189A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATCTTCGCCTCCTTCAACCTGATCTGGTCCACGGTGATCCTGGAAGTGTGGAAGCGTG GCTGTGCCAGTATGACCTACCGGTGGGGGACCCTGGTCATGAAGAGACAGTTTGAGGAGC CCCGACCGGGGTATCACGGGGTCCTGGGGATCAATTCCGTCACTGGCAGGGAGGAGCCCC TCTATCCCAGCTACAAGAGACAGTTGCGCATTTACTTGGTCTCTCTGCCGTTTGTGTGCC TCTGTCTCTACTTTTCTCTGTTTGTCATGATGATTTACTTCGACATGGAGAACTGGGCCT TGGGTCTGCACGAGAACAGCGGGTCCGAGTGGACGAGTATCCTGTTGTACGTGCCCAGCA TCATCTATGCCATCGTGATCGAGATCATGAATCGCCTCTATCGATATGCTGCCGAGTTTC TAACTTCATGGGAGAATCACAGACTGGAATCTGCCTACCAGAATCACCTAATTCTGAAAG TTTTAGTGTTCAACTTTCTAAATTGCTTTGCCTCACTGTTCTACATTGCCTTTGTCCTGA GGGATATGAAGCTCTTACGTCAGAGTTTGGCCACTCTCCTGATTACCTCCCAGATCCTTA ACCAAATTGTGGAATCCCTTCTTCCTTACTGGCTCCAAAAGAAGCACCACGTCCAGGTGA AGAAAAAGGTGCAGGCTTTAAAGGCAGACATCGATGCAACATTATATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATCTTCGCCTCCTTCAACCTGATCTGGTCCACGGTGATCCTGGAAGTGTGGAAGCGTG GCTGTGCCAGTATGACCTACCGGTGGGGGACCCTGGTCATGAAGAGACAGTTTGAGGAGC CCCGACCGGGGTATCACGGGGTCCTGGGGATCAATTCCGTCACTGGCAGGGAGGAGCCCC TCTATCCCAGCTACAAGAGACAGTTGCGCATTTACTTGGTCTCTCTGCCGTTTGTGTGCC TCTGTCTCTACTTTTCTCTGTTTGTCATGATGATTTACTTCGACATGGAGAACTGGGCCT TGGGTCTGCACGAGAACAGCGGGTCCGAGTGGACGAGTATCCTGTTGTACGTGCCCAGCA TCATCTATGCCATCGTGATCGAGATCATGAATCGCCTCTATCGATATGCTGCCGAGTTTC TAACTTCATGGGAGAATCACAGACTGGAATCTGCCTACCAGAATCACCTAATTCTGAAAG TTTTAGTGTTCAACTTTCTAAATTGCTTTGCCTCACTGTTCTACATTGCCTTTGTCCTGA GGGATATGAAGCTCTTACGTCAGAGTTTGGCCACTCTCCTGATTACCTCCCAGATCCTTA ACCAAATTGTGGAATCCCTTCTTCCTTACTGGCTCCAAAAGAAGCACCACGTCCAGGTGA AGAAAAAGGTGCAGGCTTTAAAGGCAGACATCGATGCAACATTATATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 160-279, + strand, RNAz p=0.678374 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-279, + strand, RNAz p=0.678374 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-432, gnl|bosTau2|chr22 (13559629-13560060) | |
| 1-432, gnl|Hg17|chr3 (43593619-43593188) | |
| 1-432, gnl|Mm7|chr9 (121969302-121968871) | |
| 551-708, gnl|bosTau2|chr22 (13566854-13567010) | |
| 551-708, gnl|canFam2|chr23 (5727039-5726802) | |
| 551-708, gnl|dasNov1|scaffold_64465 (7200-7437) | |
| 551-708, gnl|echTel1|scaffold_312379 (198459-198222) | |
| 551-708, gnl|fr1|chrUn (167042543-167042743) | |
| 551-708, gnl|galGal2|chr2 (40014540-40014329) | |
| 551-708, gnl|hg17|chr3 (43577698-43577936) | |
| 551-708, gnl|Hg17|chr3 (43577910-43577754) | |
| 551-708, gnl|loxAfr1|scaffold_5392 (58342-58105) | |
| 551-708, gnl|mm7|chr9 (121964826-121965053) | |
| 551-708, gnl|Mm7|chr9 (121965036-121964881) | |
| 551-708, gnl|monDom2|scaffold_7 (89278221-89277983) | |
| 551-708, gnl|oryCun1|scaffold_203325 (132077-132315) | |
| 551-708, gnl|panTro1|chr2 (44780565-44780803) | |
| 551-708, gnl|rheMac2|chr2 (93022506-93022268) | |
| 551-708, gnl|rn3|chr8 (122076728-122076956) | |
| 551-708, gnl|tetNig1|chrUn_random (128619594-128619394) | |
| 551-708, gnl|xenTro1|scaffold_319 (586364-586590) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-432, gnl|bosTau2|chr22 (13559629-13560060) | |
| 1-432, gnl|Hg17|chr3 (43593619-43593188) | |
| 1-432, gnl|Mm7|chr9 (121969302-121968871) | |
| 551-708, gnl|bosTau2|chr22 (13566854-13567010) | |
| 551-708, gnl|canFam2|chr23 (5727039-5726802) | |
| 551-708, gnl|dasNov1|scaffold_64465 (7200-7437) | |
| 551-708, gnl|echTel1|scaffold_312379 (198459-198222) | |
| 551-708, gnl|fr1|chrUn (167042543-167042743) | |
| 551-708, gnl|galGal2|chr2 (40014540-40014329) | |
| 551-708, gnl|hg17|chr3 (43577698-43577936) | |
| 551-708, gnl|Hg17|chr3 (43577910-43577754) | |
| 551-708, gnl|loxAfr1|scaffold_5392 (58342-58105) | |
| 551-708, gnl|mm7|chr9 (121964826-121965053) | |
| 551-708, gnl|Mm7|chr9 (121965036-121964881) | |
| 551-708, gnl|monDom2|scaffold_7 (89278221-89277983) | |
| 551-708, gnl|oryCun1|scaffold_203325 (132077-132315) | |
| 551-708, gnl|panTro1|chr2 (44780565-44780803) | |
| 551-708, gnl|rheMac2|chr2 (93022506-93022268) | |
| 551-708, gnl|rn3|chr8 (122076728-122076956) | |
| 551-708, gnl|tetNig1|chrUn_random (128619594-128619394) | |
| 551-708, gnl|xenTro1|scaffold_319 (586364-586590) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |