Ss1.1-Ova1-OVRM10189H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGCAGCACCTGATATCCATGTGCGAGGACCACGATCGCATCCTGTTGGCAGGCTGCC CTTCCTATGACAAGCTTCTCTCCGCCAAGAACAAGGACTACATGAGCATCATTCGGATGT GGTTGGGTGATGATGTCAAGTCTAAAGATTACATTGTGGCCCTCCAGCACCCTGTGACCA CTGACATTAAGCATTCCATAAAGATGTTCGAGTTAACCTTGGATGCGCTTATCTCATTTA ACAAGCGGACCCTAGTTCTGTTTCCAAATATTGATGCAGGGAGCAAAGAGATGGTTCGAG TGATGCGGAAGAAGGGCATTGAGCATCACCCCAATTTTCGTGCCGTGAAACATGTCCCGT TTGACCAGTTTATACAGCTGGTTGCCCATGCTGGTTGTATGATTGGGAATAGCAGTTGCG GGGTACGGGAGGTCGGCGCTTTTGGAACACCTGTGATCAACCTAGGAACACGTCAGATTG GAAGAGAAACAGGGGAGAATGTCCTGCATGTCCGGGATGCTGATACCCAAGACAAAATAT TGCAAGCACTGCACCTTCAGTTTGGGAAACAGTACCCTTGTTCAAAGATATATGGGGATG GAAACGCTGTTCCAAGGATTTTGAAATTTCTCAAATCTATTGATCTTCAAGAGCCACTAC AAAAGAAATTCTGTTTTCCTCCCGTGAAGGATAACATCTCCCAGGACATTGACCATATTC TTGAAACTCTAAGCGCCTTGGCTGTTGATCTTGGTGGGACAAACCTCCGAGTTGCCATAG TCAGCATGAAGGGTGAAATAGTTAAGAAGTATACGCAGTTCAATCCTAAAACCTATGAGG AGAGGATTAATTTAATTCTACAGATGTGTGTAGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGCAGCACCTGATATCCATGTGCGAGGACCACGATCGCATCCTGTTGGCAGGCTGCC CTTCCTATGACAAGCTTCTCTCCGCCAAGAACAAGGACTACATGAGCATCATTCGGATGT GGTTGGGTGATGATGTCAAGTCTAAAGATTACATTGTGGCCCTCCAGCACCCTGTGACCA CTGACATTAAGCATTCCATAAAGATGTTCGAGTTAACCTTGGATGCGCTTATCTCATTTA ACAAGCGGACCCTAGTTCTGTTTCCAAATATTGATGCAGGGAGCAAAGAGATGGTTCGAG TGATGCGGAAGAAGGGCATTGAGCATCACCCCAATTTTCGTGCCGTGAAACATGTCCCGT TTGACCAGTTTATACAGCTGGTTGCCCATGCTGGTTGTATGATTGGGAATAGCAGTTGCG GGGTACGGGAGGTCGGCGCTTTTGGAACACCTGTGATCAACCTAGGAACACGTCAGATTG GAAGAGAAACAGGGGAGAATGTCCTGCATGTCCGGGATGCTGATACCCAAGACAAAATAT TGCAAGCACTGCACCTTCAGTTTGGGAAACAGTACCCTTGTTCAAAGATATATGGGGATG GAAACGCTGTTCCAAGGATTTTGAAATTTCTCAAATCTATTGATCTTCAAGAGCCACTAC AAAAGAAATTCTGTTTTCCTCCCGTGAAGGATAACATCTCCCAGGACATTGACCATATTC TTGAAACTCTAAGCGCCTTGGCTGTTGATCTTGGTGGGACAAACCTCCGAGTTGCCATAG TCAGCATGAAGGGTGAAATAGTTAAGAAGTATACGCAGTTCAATCCTAAAACCTATGAGG AGAGGATTAATTTAATTCTACAGATGTGTGTAGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 318-437, + strand, RNAz p=0.58396 | |
| 620-739, - strand, RNAz p=0.9553 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 318-437, + strand, RNAz p=0.58396 | |
| 620-739, - strand, RNAz p=0.9553 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 3-138, gnl|bosTau2|chr8 (31979702-31979569) | |
| 3-138, gnl|Hg17|chr9 (36236151-36236016) | |
| 3-138, gnl|Mm7|chr4 (44073713-44073579) | |
| 278-493, gnl|bosTau2|chr8 (31971643-31971428) | |
| 278-493, gnl|canFam2|chr11 (55732698-55732916) | |
| 278-493, gnl|danRer3|chr1 (7619243-7619459) | |
| 278-493, gnl|dasNov1|scaffold_849 (194798-195016) | |
| 278-493, gnl|echTel1|scaffold_316005 (88184-88402) | |
| 278-493, gnl|fr1|chrUn (93008111-93008331) | |
| 278-493, gnl|galGal2|chrZ (24111582-24111800) | |
| 278-493, gnl|hg17|chr9 (36223916-36224134) | |
| 278-493, gnl|Hg17|chr9 (36224131-36223916) | |
| 278-493, gnl|mm7|chr4 (44066584-44066802) | |
| 278-493, gnl|Mm7|chr4 (44066799-44066584) | |
| 278-493, gnl|monDom2|scaffold_19 (8334258-8334476) | |
| 278-493, gnl|oryCun1|scaffold_208234 (99787-100005) | |
| 278-493, gnl|panTro1|chr11 (36838890-36839108) | |
| 278-493, gnl|rheMac2|chr15 (41236218-41236000) | |
| 278-493, gnl|rn3|chr5 (60520112-60520330) | |
| 278-493, gnl|tetNig1|chr18 (5233424-5233644) | |
| 278-493, gnl|xenTro1|scaffold_443 (1000547-1000329) | |
| 580-800, gnl|bosTau2|chr8 (31968347-31968128) | |
| 580-800, gnl|canFam2|chr11 (55728177-55728419) | |
| 580-800, gnl|danRer3|chr1 (7616205-7616431) | |
| 580-800, gnl|dasNov1|scaffold_849 (179233-179474) | |
| 580-800, gnl|echTel1|scaffold_316005 (82445-82685) | |
| 580-800, gnl|fr1|chrUn (93007381-93007609) | |
| 580-800, gnl|galGal2|chrZ (24106501-24106748) | |
| 580-800, gnl|hg17|chr9 (36217229-36217471) | |
| 580-800, gnl|Hg17|chr9 (36217456-36217237) | |
| 580-800, gnl|loxAfr1|scaffold_14902 (28965-28725) | |
| 580-800, gnl|mm7|chr4 (44058557-44058800) | |
| 580-800, gnl|Mm7|chr4 (44058784-44058565) | |
| 580-800, gnl|monDom2|scaffold_19 (8315432-8315672) | |
| 580-800, gnl|oryCun1|scaffold_208234 (94643-94884) | |
| 580-800, gnl|panTro1|chr11 (36832197-36832439) | |
| 580-800, gnl|rheMac2|chr15 (41242629-41242387) | |
| 580-800, gnl|rn3|chr5 (60513704-60513946) | |
| 580-800, gnl|tetNig1|chr18 (5232628-5232853) | |
| 580-800, gnl|xenTro1|scaffold_443 (1002063-1001829) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-138, gnl|bosTau2|chr8 (31979702-31979569) | |
| 3-138, gnl|Hg17|chr9 (36236151-36236016) | |
| 3-138, gnl|Mm7|chr4 (44073713-44073579) | |
| 278-493, gnl|bosTau2|chr8 (31971643-31971428) | |
| 278-493, gnl|canFam2|chr11 (55732698-55732916) | |
| 278-493, gnl|danRer3|chr1 (7619243-7619459) | |
| 278-493, gnl|dasNov1|scaffold_849 (194798-195016) | |
| 278-493, gnl|echTel1|scaffold_316005 (88184-88402) | |
| 278-493, gnl|fr1|chrUn (93008111-93008331) | |
| 278-493, gnl|galGal2|chrZ (24111582-24111800) | |
| 278-493, gnl|hg17|chr9 (36223916-36224134) | |
| 278-493, gnl|Hg17|chr9 (36224131-36223916) | |
| 278-493, gnl|mm7|chr4 (44066584-44066802) | |
| 278-493, gnl|Mm7|chr4 (44066799-44066584) | |
| 278-493, gnl|monDom2|scaffold_19 (8334258-8334476) | |
| 278-493, gnl|oryCun1|scaffold_208234 (99787-100005) | |
| 278-493, gnl|panTro1|chr11 (36838890-36839108) | |
| 278-493, gnl|rheMac2|chr15 (41236218-41236000) | |
| 278-493, gnl|rn3|chr5 (60520112-60520330) | |
| 278-493, gnl|tetNig1|chr18 (5233424-5233644) | |
| 278-493, gnl|xenTro1|scaffold_443 (1000547-1000329) | |
| 580-800, gnl|bosTau2|chr8 (31968347-31968128) | |
| 580-800, gnl|canFam2|chr11 (55728177-55728419) | |
| 580-800, gnl|danRer3|chr1 (7616205-7616431) | |
| 580-800, gnl|dasNov1|scaffold_849 (179233-179474) | |
| 580-800, gnl|echTel1|scaffold_316005 (82445-82685) | |
| 580-800, gnl|fr1|chrUn (93007381-93007609) | |
| 580-800, gnl|galGal2|chrZ (24106501-24106748) | |
| 580-800, gnl|hg17|chr9 (36217229-36217471) | |
| 580-800, gnl|Hg17|chr9 (36217456-36217237) | |
| 580-800, gnl|loxAfr1|scaffold_14902 (28965-28725) | |
| 580-800, gnl|mm7|chr4 (44058557-44058800) | |
| 580-800, gnl|Mm7|chr4 (44058784-44058565) | |
| 580-800, gnl|monDom2|scaffold_19 (8315432-8315672) | |
| 580-800, gnl|oryCun1|scaffold_208234 (94643-94884) | |
| 580-800, gnl|panTro1|chr11 (36832197-36832439) | |
| 580-800, gnl|rheMac2|chr15 (41242629-41242387) | |
| 580-800, gnl|rn3|chr5 (60513704-60513946) | |
| 580-800, gnl|tetNig1|chr18 (5232628-5232853) | |
| 580-800, gnl|xenTro1|scaffold_443 (1002063-1001829) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |