Non-Coding RNA Search

Ss1.1-Ova1-OVRM10190F04.5

Sequence:


               
               GCGGGCTCCGCGGAGGGACGGGCGCACAGATCGCAGGAGGGACAGACCCAAGAGCACGCC
TCGCAGCCGGCCACGTCCCCACCCCCTGGCGCCCACGCCTTCTCCGCACCGCCTCCTCTA
TATGGCACAAACTTTCCTCCCGGGACGGAACACGCTCTTCGGGAGCCCGCGCCCGCGCCT
TCTTCTCGCCTGGTCCAGAACGCTCTGCTGAAATGGGTTGCGGACTGAACAAGTTGGAGA
AACGTGATGACAAACGGCCTGGAAATATCTATTCGACACTGAAGAGGCCTCAGGTGGAAA
CCAAGATAGATGTGTCCTATGAGTACCGCTTCCTGGATTTCACCACCCTGAGTGCTGCGG
AGCTCCCACGGGCCTCGGCTGGGGCTTGCCTCCCTTAGGGACCTGCCCGCCCAGCTGCTG
GAGCTGTACCAGCAGGGCTTCTCGCTGGTGGCTCTGCATCCCTTTGTGCAGCCGACCCAT
GAGTGGAAGAAGACACCCCTCGAGCACATCTTCAGGGCCATCCTGATCAAGAAAACTGAC
AGGTCTCAGAACACAGATCTTCAAAATGAAGGCTACATCTTGGAATTAGATTGCTGTTCT
TCCCTAGAGCATCTGACAGGCCAAAAAATCATCCCAGAATTCATCAAGAAGATCCAGGAA
GCTGCGAGTCAGGGCCTGAAATTCGCGGGGGTCATCCCTCAGTACCACTGTTCTGGGGAC
TCGGCGGGCGGCAGCCCCCAGACGGAAGCCCAGGAAGTGACAATGGAGCCTGGCAGGTGT
GGGCATGAGAACCTGGGGGCTACAGATGCACCCGAGGGGATGGACGGAAGCCCAGAGCCT
GGTCAAGGTCTGAGAGGGGCGACACCTGCTTCCCAGCCACCCAGCCCGCCCTTGGGAGAG
CAGGATGGCGTGGACTCTCCATCGCAAGGACTCTCCATGAGCAGGACGCAGGATGGGCCA
GCCGGCAACCTGTCGGAAGAGCGTGGAGAGCCACGCTCGGGAAAAATGGAAATCTTCGCC
CTTTTCAACAAACCGAAGAGCCATCAGAAATGCCGGCAGTACTACCCTGTCACCATCCCA
CTCCGGGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGATGCCAACTGGCTGGAGCAC
ATGAGTGACCACTTCCGGAAGGGCGGCGTCCTGGTGAACGCGGTCTTCTCCCTCAGCCTG
GTCCATGATTCCTTACACGGCTTGACAGATGGAGTATTCATCTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGCTCCGCGGAGGGACGGGCGCACAGATCGCAGGAGGGACAGACCCAAGAGCACGCC
TCGCAGCCGGCCACGTCCCCACCCCCTGGCGCCCACGCCTTCTCCGCACCGCCTCCTCTA
TATGGCACAAACTTTCCTCCCGGGACGGAACACGCTCTTCGGGAGCCCGCGCCCGCGCCT
TCTTCTCGCCTGGTCCAGAACGCTCTGCTGAAATGGGTTGCGGACTGAACAAGTTGGAGA
AACGTGATGACAAACGGCCTGGAAATATCTATTCGACACTGAAGAGGCCTCAGGTGGAAA
CCAAGATAGATGTGTCCTATGAGTACCGCTTCCTGGATTTCACCACCCTGAGTGCTGCGG
AGCTCCCACGGGCCTCGGCTGGGGCTTGCCTCCCTTAGGGACCTGCCCGCCCAGCTGCTG
GAGCTGTACCAGCAGGGCTTCTCGCTGGTGGCTCTGCATCCCTTTGTGCAGCCGACCCAT
GAGTGGAAGAAGACACCCCTCGAGCACATCTTCAGGGCCATCCTGATCAAGAAAACTGAC
AGGTCTCAGAACACAGATCTTCAAAATGAAGGCTACATCTTGGAATTAGATTGCTGTTCT
TCCCTAGAGCATCTGACAGGCCAAAAAATCATCCCAGAATTCATCAAGAAGATCCAGGAA
GCTGCGAGTCAGGGCCTGAAATTCGCGGGGGTCATCCCTCAGTACCACTGTTCTGGGGAC
TCGGCGGGCGGCAGCCCCCAGACGGAAGCCCAGGAAGTGACAATGGAGCCTGGCAGGTGT
GGGCATGAGAACCTGGGGGCTACAGATGCACCCGAGGGGATGGACGGAAGCCCAGAGCCT
GGTCAAGGTCTGAGAGGGGCGACACCTGCTTCCCAGCCACCCAGCCCGCCCTTGGGAGAG
CAGGATGGCGTGGACTCTCCATCGCAAGGACTCTCCATGAGCAGGACGCAGGATGGGCCA
GCCGGCAACCTGTCGGAAGAGCGTGGAGAGCCACGCTCGGGAAAAATGGAAATCTTCGCC
CTTTTCAACAAACCGAAGAGCCATCAGAAATGCCGGCAGTACTACCCTGTCACCATCCCA
CTCCGGGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGATGCCAACTGGCTGGAGCAC
ATGAGTGACCACTTCCGGAAGGGCGGCGTCCTGGTGAACGCGGTCTTCTCCCTCAGCCTG
GTCCATGATTCCTTACACGGCTTGACAGATGGAGTATTCATCTTTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55666807|ref|XP_520659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55666807|ref|XP_520659.1|

Aligned organism(s): 26 entry(ies)

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Aligned organism(s): 26 entry(ies)

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               1004-1205, gnl|bosTau2|chr1 (24509930-24510131)
               

               
               1004-1205, gnl|canFam2|chr23 (29473026-29472748)
               

               
               1004-1205, gnl|canFam2|chr23 (29472956-29472739)
               

               
               1004-1205, gnl|echTel1|scaffold_320105 (83639-83920)
               

               
               1004-1205, gnl|echTel1|scaffold_320105 (83712-83929)
               

               
               1004-1205, gnl|fr1|chrUn (96567383-96567600)
               

               
               1004-1205, gnl|galGal2|chr2 (33502155-33502365)
               

               
               1004-1205, gnl|hg17|chr3 (16386583-16386800)
               

               
               1004-1205, gnl|Hg17|chr3 (16386790-16386589)
               

               
               1004-1205, gnl|hg17|chrY (7633180-7633461)
               

               
               1004-1205, gnl|loxAfr1|scaffold_23290 (30729-31010)
               

               
               1004-1205, gnl|loxAfr1|scaffold_23290 (30802-31019)
               

               
               1004-1205, gnl|mm7|chr17 (48195199-48195459)
               

               
               1004-1205, gnl|mm7|chr17 (48195251-48195468)
               

               
               1004-1205, gnl|Mm7|chr17 (48195458-48195257)
               

               
               1004-1205, gnl|monDom2|scaffold_7 (72017945-72018209)
               

               
               1004-1205, gnl|monDom2|scaffold_7 (72017998-72018234)
               

               
               1004-1205, gnl|oryCun1|scaffold_211494 (6027-5646)
               

               
               1004-1205, gnl|oryCun1|scaffold_211494 (5886-5637)
               

               
               1004-1205, gnl|panTro1|chr2 (17004899-17005116)
               

               
               1004-1205, gnl|panTro1|chrUn_random (19244640-19244921)
               

               
               1004-1205, gnl|rheMac2|chr2 (158689444-158689729)
               

               
               1004-1205, gnl|rheMac2|chr2 (158689521-158689738)
               

               
               1004-1205, gnl|rn3|chr9 (6153436-6153176)
               

               
               1004-1205, gnl|rn3|chr9 (6153384-6153167)
               

               
               1004-1205, gnl|xenTro1|scaffold_22711 (630-840)

Aligned organism(s): 26 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1004-1205, gnl|bosTau2|chr1 (24509930-24510131)
               

               
               1004-1205, gnl|canFam2|chr23 (29473026-29472748)
               

               
               1004-1205, gnl|canFam2|chr23 (29472956-29472739)
               

               
               1004-1205, gnl|echTel1|scaffold_320105 (83639-83920)
               

               
               1004-1205, gnl|echTel1|scaffold_320105 (83712-83929)
               

               
               1004-1205, gnl|fr1|chrUn (96567383-96567600)
               

               
               1004-1205, gnl|galGal2|chr2 (33502155-33502365)
               

               
               1004-1205, gnl|hg17|chr3 (16386583-16386800)
               

               
               1004-1205, gnl|Hg17|chr3 (16386790-16386589)
               

               
               1004-1205, gnl|hg17|chrY (7633180-7633461)
               

               
               1004-1205, gnl|loxAfr1|scaffold_23290 (30729-31010)
               

               
               1004-1205, gnl|loxAfr1|scaffold_23290 (30802-31019)
               

               
               1004-1205, gnl|mm7|chr17 (48195199-48195459)
               

               
               1004-1205, gnl|mm7|chr17 (48195251-48195468)
               

               
               1004-1205, gnl|Mm7|chr17 (48195458-48195257)
               

               
               1004-1205, gnl|monDom2|scaffold_7 (72017945-72018209)
               

               
               1004-1205, gnl|monDom2|scaffold_7 (72017998-72018234)
               

               
               1004-1205, gnl|oryCun1|scaffold_211494 (6027-5646)
               

               
               1004-1205, gnl|oryCun1|scaffold_211494 (5886-5637)
               

               
               1004-1205, gnl|panTro1|chr2 (17004899-17005116)
               

               
               1004-1205, gnl|panTro1|chrUn_random (19244640-19244921)
               

               
               1004-1205, gnl|rheMac2|chr2 (158689444-158689729)
               

               
               1004-1205, gnl|rheMac2|chr2 (158689521-158689738)
               

               
               1004-1205, gnl|rn3|chr9 (6153436-6153176)
               

               
               1004-1205, gnl|rn3|chr9 (6153384-6153167)
               

               
               1004-1205, gnl|xenTro1|scaffold_22711 (630-840)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1004-1205, gnl\|bosTau2\|chr1 (24509930-24510131)
	1004-1205, gnl\|canFam2\|chr23 (29473026-29472748)
	1004-1205, gnl\|canFam2\|chr23 (29472956-29472739)
	1004-1205, gnl\|echTel1\|scaffold_320105 (83639-83920)
	1004-1205, gnl\|echTel1\|scaffold_320105 (83712-83929)
	1004-1205, gnl\|fr1\|chrUn (96567383-96567600)
	1004-1205, gnl\|galGal2\|chr2 (33502155-33502365)
	1004-1205, gnl\|hg17\|chr3 (16386583-16386800)
	1004-1205, gnl\|Hg17\|chr3 (16386790-16386589)
	1004-1205, gnl\|hg17\|chrY (7633180-7633461)
	1004-1205, gnl\|loxAfr1\|scaffold_23290 (30729-31010)
	1004-1205, gnl\|loxAfr1\|scaffold_23290 (30802-31019)
	1004-1205, gnl\|mm7\|chr17 (48195199-48195459)
	1004-1205, gnl\|mm7\|chr17 (48195251-48195468)
	1004-1205, gnl\|Mm7\|chr17 (48195458-48195257)
	1004-1205, gnl\|monDom2\|scaffold_7 (72017945-72018209)
	1004-1205, gnl\|monDom2\|scaffold_7 (72017998-72018234)
	1004-1205, gnl\|oryCun1\|scaffold_211494 (6027-5646)
	1004-1205, gnl\|oryCun1\|scaffold_211494 (5886-5637)
	1004-1205, gnl\|panTro1\|chr2 (17004899-17005116)
	1004-1205, gnl\|panTro1\|chrUn_random (19244640-19244921)
	1004-1205, gnl\|rheMac2\|chr2 (158689444-158689729)
	1004-1205, gnl\|rheMac2\|chr2 (158689521-158689738)
	1004-1205, gnl\|rn3\|chr9 (6153436-6153176)
	1004-1205, gnl\|rn3\|chr9 (6153384-6153167)
	1004-1205, gnl\|xenTro1\|scaffold_22711 (630-840)