Non-Coding RNA Search

Ss1.1-Ova1-OVRM10190F06.5

Sequence:


               
               ACTGTGATGGCTGGAGAGATGACGATCTTAGGATCAGCTGTTTTGACTCTCCTGTTGGCT
GGCTATTTGGCACAACAGTATTTACCATTGCCTACTCCTAAAGTGATTGGTATTGATCTT
GGCACCACCTACTGTTCAGTTGGGGTATTTTTTCCTGGCACAGGAAAAGTAAAGGTCATT
CCAGATGAAAATGGGCATATCAGCATACCCAGCATGGTGTCCTTTACTGACGACGATGTT
TATGTGGGGTATGAAAGCTTAGAACTGGCAGATTCAAATCCTCAGAACACAATATATGAT
GCCAAAAGATTCATAGGCAAGATTTTTACCCCAGAAGAGCTAGAGGCCGAAATTGGCAGA
TACCCATTTAAGGTTTTAAACAAAAATGGTATGGTTGAATTTTCTGTGACAAGTAATGAG
ACTATCACCGTTACCCCAGAATATGTTGGCTCTAGACTATTGTTGAAATTAAAGGAAATG
GCAGAGGAATATCTTGGAATGCCAGTTGCCAACGCTGTTATTTCTGTACCAGCAGAATTT
GATCTAAAACAGAGAAATTCAACAATTGAAGCTGCTAATCTTGCAGGACTGAAGATCTTA
AGAGTAATAAATGAGCCCACAGCAGCAGCTATGGCCTATGGTCTCCACAAAGCTGATGTC
TTTCACGTCTTGGTAATAGATTTGGGTGGAGGAACTCTCGATGTCTCTCTACTGAATAAA
CAAGGAGGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTGATGGCTGGAGAGATGACGATCTTAGGATCAGCTGTTTTGACTCTCCTGTTGGCT
GGCTATTTGGCACAACAGTATTTACCATTGCCTACTCCTAAAGTGATTGGTATTGATCTT
GGCACCACCTACTGTTCAGTTGGGGTATTTTTTCCTGGCACAGGAAAAGTAAAGGTCATT
CCAGATGAAAATGGGCATATCAGCATACCCAGCATGGTGTCCTTTACTGACGACGATGTT
TATGTGGGGTATGAAAGCTTAGAACTGGCAGATTCAAATCCTCAGAACACAATATATGAT
GCCAAAAGATTCATAGGCAAGATTTTTACCCCAGAAGAGCTAGAGGCCGAAATTGGCAGA
TACCCATTTAAGGTTTTAAACAAAAATGGTATGGTTGAATTTTCTGTGACAAGTAATGAG
ACTATCACCGTTACCCCAGAATATGTTGGCTCTAGACTATTGTTGAAATTAAAGGAAATG
GCAGAGGAATATCTTGGAATGCCAGTTGCCAACGCTGTTATTTCTGTACCAGCAGAATTT
GATCTAAAACAGAGAAATTCAACAATTGAAGCTGCTAATCTTGCAGGACTGAAGATCTTA
AGAGTAATAAATGAGCCCACAGCAGCAGCTATGGCCTATGGTCTCCACAAAGCTGATGTC
TTTCACGTCTTGGTAATAGATTTGGGTGGAGGAACTCTCGATGTCTCTCTACTGAATAAA
CAAGGAGGAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26339684|dbj|BAC33513.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26339684|dbj|BAC33513.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-374, gnl|bosTau2|chr1 (14749364-14749713)
               

               
               25-374, gnl|Hg17|chr21 (14675742-14675393)
               

               
               25-374, gnl|Mm7|chr16 (75762585-75762238)
               


               
               577-732, gnl|bosTau2|chr1 (14754487-14754642)
               

               
               577-732, gnl|Hg17|chr21 (14670021-14669866)
               

               
               577-732, gnl|Mm7|chr16 (75756888-75756733)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-374, gnl|bosTau2|chr1 (14749364-14749713)
               

               
               25-374, gnl|Hg17|chr21 (14675742-14675393)
               

               
               25-374, gnl|Mm7|chr16 (75762585-75762238)
               


               
               577-732, gnl|bosTau2|chr1 (14754487-14754642)
               

               
               577-732, gnl|Hg17|chr21 (14670021-14669866)
               

               
               577-732, gnl|Mm7|chr16 (75756888-75756733)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	25-374, gnl\|bosTau2\|chr1 (14749364-14749713)
	25-374, gnl\|Hg17\|chr21 (14675742-14675393)
	25-374, gnl\|Mm7\|chr16 (75762585-75762238)

	577-732, gnl\|bosTau2\|chr1 (14754487-14754642)
	577-732, gnl\|Hg17\|chr21 (14670021-14669866)
	577-732, gnl\|Mm7\|chr16 (75756888-75756733)