Non-Coding RNA Search

Ss1.1-Ova1-OVRM10190H01.5

Sequence:


               
               GAGAAGAAGACTGAAAATTTGAAACTGGATGTAGTCACACAAGAGTATTGCAGTGTCTAA
GAGCTGATAAGGGCTTTAAGGAAATTTAGAAATCTTTGAAGGAATGGTTGATATGATCAA
GGCTTGTCCATAAGAAAAGAGAACTAGAATAATTGAGAATACCAGTGGATTCCAATCTCA
GTGAAGGGAACTACAGAATCCCCAGGGGCTTACTTGAAGAATATTTGGGAATGAATGTGA
CTTGAATTTAAAAAGAAATAACAAATGTTTTAAAAAATACTCTATAGATGTGATACATAG
TGCATCATATAATTTTAGAAGCAAATGAACATTAAAAATTGTATTTTAGAAAGCCTGAAT
TTTCACATTTTAGAGAATTTTAGAAAGTTTAAATTTTTCTTTAACAATGGTGATTTGCTT
TTATTCATTCCTTCCTTTATTTGATAAATAAATATTGGGCACCCAGTTCAACAATATACA
AAGAGGAAAAGAGATAATTCTGCCACTTGCCCAGACGATGGTAATGTCTTCCCTGAGTGT
GTTCTCACATGTGCCCACACTTTATAATAATTTGTAGAAGAAAAGTCATTCGGACTTAAA
GATTCGCCATCACTTAATAATACAGTTCTGGGGCAGCTCCACACTTGAATGCCTGTTCTT
TTTTTTCCACTGGGAGAGGCTGAAAGAAAAGTCATTATAGGGTCTGATTCTGGGGCAAGT
GAAGCTGACCTGACCTTTTAATTAAAATTTACATAATTGGTGCTCAGATTTCTGATATCC
AGCAACCCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGAAGACTGAAAATTTGAAACTGGATGTAGTCACACAAGAGTATTGCAGTGTCTAA
GAGCTGATAAGGGCTTTAAGGAAATTTAGAAATCTTTGAAGGAATGGTTGATATGATCAA
GGCTTGTCCATAAGAAAAGAGAACTAGAATAATTGAGAATACCAGTGGATTCCAATCTCA
GTGAAGGGAACTACAGAATCCCCAGGGGCTTACTTGAAGAATATTTGGGAATGAATGTGA
CTTGAATTTAAAAAGAAATAACAAATGTTTTAAAAAATACTCTATAGATGTGATACATAG
TGCATCATATAATTTTAGAAGCAAATGAACATTAAAAATTGTATTTTAGAAAGCCTGAAT
TTTCACATTTTAGAGAATTTTAGAAAGTTTAAATTTTTCTTTAACAATGGTGATTTGCTT
TTATTCATTCCTTCCTTTATTTGATAAATAAATATTGGGCACCCAGTTCAACAATATACA
AAGAGGAAAAGAGATAATTCTGCCACTTGCCCAGACGATGGTAATGTCTTCCCTGAGTGT
GTTCTCACATGTGCCCACACTTTATAATAATTTGTAGAAGAAAAGTCATTCGGACTTAAA
GATTCGCCATCACTTAATAATACAGTTCTGGGGCAGCTCCACACTTGAATGCCTGTTCTT
TTTTTTCCACTGGGAGAGGCTGAAAGAAAAGTCATTATAGGGTCTGATTCTGGGGCAAGT
GAAGCTGACCTGACCTTTTAATTAAAATTTACATAATTGGTGCTCAGATTTCTGATATCC
AGCAACCCATCA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-331, gnl|bosTau2|chr17 (7877619-7877948)
               

               
               1-331, gnl|canFam2|chr15 (47341306-47341734)
               

               
               1-331, gnl|dasNov1|scaffold_108204 (3282-2888)
               

               
               1-331, gnl|echTel1|scaffold_309179 (86654-87090)
               

               
               1-331, gnl|hg17|chr4 (147069165-147069602)
               

               
               1-331, gnl|Hg17|chr4 (147069550-147069241)
               

               
               1-331, gnl|monDom2|scaffold_9 (14100895-14101311)
               

               
               1-331, gnl|panTro1|chr3 (164320762-164321199)
               

               
               1-331, gnl|rheMac2|chr5 (137959131-137959557)
               


               
               357-792, gnl|bosTau2|chr17 (7878046-7878473)
               

               
               357-792, gnl|Hg17|chr4 (147069166-147068722)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-331, gnl|bosTau2|chr17 (7877619-7877948)
               

               
               1-331, gnl|canFam2|chr15 (47341306-47341734)
               

               
               1-331, gnl|dasNov1|scaffold_108204 (3282-2888)
               

               
               1-331, gnl|echTel1|scaffold_309179 (86654-87090)
               

               
               1-331, gnl|hg17|chr4 (147069165-147069602)
               

               
               1-331, gnl|Hg17|chr4 (147069550-147069241)
               

               
               1-331, gnl|monDom2|scaffold_9 (14100895-14101311)
               

               
               1-331, gnl|panTro1|chr3 (164320762-164321199)
               

               
               1-331, gnl|rheMac2|chr5 (137959131-137959557)
               


               
               357-792, gnl|bosTau2|chr17 (7878046-7878473)
               

               
               357-792, gnl|Hg17|chr4 (147069166-147068722)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	1-331, gnl\|bosTau2\|chr17 (7877619-7877948)
	1-331, gnl\|canFam2\|chr15 (47341306-47341734)
	1-331, gnl\|dasNov1\|scaffold_108204 (3282-2888)
	1-331, gnl\|echTel1\|scaffold_309179 (86654-87090)
	1-331, gnl\|hg17\|chr4 (147069165-147069602)
	1-331, gnl\|Hg17\|chr4 (147069550-147069241)
	1-331, gnl\|monDom2\|scaffold_9 (14100895-14101311)
	1-331, gnl\|panTro1\|chr3 (164320762-164321199)
	1-331, gnl\|rheMac2\|chr5 (137959131-137959557)

	357-792, gnl\|bosTau2\|chr17 (7878046-7878473)
	357-792, gnl\|Hg17\|chr4 (147069166-147068722)