Ss1.1-Ova1-OVRM10191F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATATGGCTTTATCATCGTGTTTCCTTTTACCCGGAGATGCCACCGTCGCAAGCTCCTC GTGGGATAATAACATCTATTTTTATTCCATAGCATTTGGAAGACGCCAGGACACACTGAT GGGACATGACGATGCTGTGAGTAAGATCTGTTGGCATGACAACCGGCTGTATTCTGCATC CTGGGACTCCACCGTGAAGGTGTGGTCTGCGCTTCCCACGGGGACAACGGGCGCACAGAG GCTCCAGTTTGAGCTGCTGGCGGAGCTGGAGCACGACGTGGGCGTCGACACAATGAGTTT AAATGCTGCGAGCGCACTGTTGGTCTCGGGCACCAGAGAAGGCGCCGTCAATATCTGGGA CCTTGCCACCGCCACCGTCTTGCACCAGATTCCGTGTCATTCAGGGACCGTGTATCATAC TGCTTTCAGCCCAGACAGCCGCCACGTCCTCAGCACGGGAGAGGACGGCTCTCTGAACGT CATAGATGTGCAGACAGGAATGCTCATCTCTTCCCTGACCTCGGCCGAGCCCCAGAGGTG CTTTCTCTGGGATGGGAATTCGGTTTTATCCGGAAGCCAGTCTGGCGAGCTGCTTGTTTG GGACCTCCTCGGGGCAAAGATCAGTGAGAGGATCCGGGGCCACACAGGCGCCGTGACATG CATGTGGATGAACGAACAGTGCAGCAGTGTCATCACGGGAGGTGAAGACAGACAGATAAT CTTCTGGAAGTTGCAGTATTAAGTGCCTTTTCCTCGAGTATTATTGAGCTCTAATGTTTA AGCCAAACTTAAATGACTATTTAAAAGTGAATGTGCAATGATAGTCATCAGACGTTTTAC ACATGAGAAACTTGTGGCTTAAACTTCACAAATCATGGTGACTTCACTGAAGGCCACTAG TTGTCATCCTCTAAAGCAGATGAAGACGTGACAGCAGTGGCGAGAAAACAGGTGGTCAGC CCAGGATTCCAACAGAAGACAGGTTTGGGTGGCAGAGCCAGTAGCTTAGATCCTAAAGCC AGCTGGGGAAATTTCCAGAAAGCACTGAACTTGAGGATTTTCCAAGAAAATGTGAGTATT CTCTGCTACTGCTGAGTCAGTGTTACGTCTTCCTAATCACAAGCACTGTTCATCAGGTTT GGGGGTGTGTGTTTTCATGGAGTGGTTACTTTCTATAACCTCTTGTCCCCAGGTTCTAAG AACCTGGGGAAGGATTAGCAGTTCTTATAACAGTTCACTGTCTATAGGAACAGTTTTTCA TGATAGCTATTATATGCTCATCTTTTCTATGGTATTAAAAATATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATATGGCTTTATCATCGTGTTTCCTTTTACCCGGAGATGCCACCGTCGCAAGCTCCTC GTGGGATAATAACATCTATTTTTATTCCATAGCATTTGGAAGACGCCAGGACACACTGAT GGGACATGACGATGCTGTGAGTAAGATCTGTTGGCATGACAACCGGCTGTATTCTGCATC CTGGGACTCCACCGTGAAGGTGTGGTCTGCGCTTCCCACGGGGACAACGGGCGCACAGAG GCTCCAGTTTGAGCTGCTGGCGGAGCTGGAGCACGACGTGGGCGTCGACACAATGAGTTT AAATGCTGCGAGCGCACTGTTGGTCTCGGGCACCAGAGAAGGCGCCGTCAATATCTGGGA CCTTGCCACCGCCACCGTCTTGCACCAGATTCCGTGTCATTCAGGGACCGTGTATCATAC TGCTTTCAGCCCAGACAGCCGCCACGTCCTCAGCACGGGAGAGGACGGCTCTCTGAACGT CATAGATGTGCAGACAGGAATGCTCATCTCTTCCCTGACCTCGGCCGAGCCCCAGAGGTG CTTTCTCTGGGATGGGAATTCGGTTTTATCCGGAAGCCAGTCTGGCGAGCTGCTTGTTTG GGACCTCCTCGGGGCAAAGATCAGTGAGAGGATCCGGGGCCACACAGGCGCCGTGACATG CATGTGGATGAACGAACAGTGCAGCAGTGTCATCACGGGAGGTGAAGACAGACAGATAAT CTTCTGGAAGTTGCAGTATTAAGTGCCTTTTCCTCGAGTATTATTGAGCTCTAATGTTTA AGCCAAACTTAAATGACTATTTAAAAGTGAATGTGCAATGATAGTCATCAGACGTTTTAC ACATGAGAAACTTGTGGCTTAAACTTCACAAATCATGGTGACTTCACTGAAGGCCACTAG TTGTCATCCTCTAAAGCAGATGAAGACGTGACAGCAGTGGCGAGAAAACAGGTGGTCAGC CCAGGATTCCAACAGAAGACAGGTTTGGGTGGCAGAGCCAGTAGCTTAGATCCTAAAGCC AGCTGGGGAAATTTCCAGAAAGCACTGAACTTGAGGATTTTCCAAGAAAATGTGAGTATT CTCTGCTACTGCTGAGTCAGTGTTACGTCTTCCTAATCACAAGCACTGTTCATCAGGTTT GGGGGTGTGTGTTTTCATGGAGTGGTTACTTTCTATAACCTCTTGTCCCCAGGTTCTAAG AACCTGGGGAAGGATTAGCAGTTCTTATAACAGTTCACTGTCTATAGGAACAGTTTTTCA TGATAGCTATTATATGCTCATCTTTTCTATGGTATTAAAAATATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1115-1308, + strand, RNAz p=0.966302 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1115-1308, + strand, RNAz p=0.966302 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003580, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 76-201, gnl|bosTau2|chr14 (13055333-13055458) | |
| 76-201, gnl|canFam2|chr29 (12380402-12380552) | |
| 76-201, gnl|danRer3|chrUn (100894671-100894828) | |
| 76-201, gnl|dasNov1|scaffold_16471 (7878-8028) | |
| 76-201, gnl|echTel1|scaffold_47323 (633-482) | |
| 76-201, gnl|fr1|chrUn (223538641-223538497) | |
| 76-201, gnl|galGal2|chr2 (111340554-111340696) | |
| 76-201, gnl|hg17|chr8 (59664564-59664709) | |
| 76-201, gnl|Hg17|chr8 (59664688-59664563) | |
| 76-201, gnl|loxAfr1|scaffold_11936 (40438-40288) | |
| 76-201, gnl|mm7|chr4 (6335704-6335849) | |
| 76-201, gnl|Mm7|chr4 (6335828-6335703) | |
| 76-201, gnl|monDom2|scaffold_4 (105051536-105051384) | |
| 76-201, gnl|oryCun1|scaffold_165127 (4359-4214) | |
| 76-201, gnl|panTro1|chr7 (61435441-61435586) | |
| 76-201, gnl|rheMac2|chr8 (61224576-61224721) | |
| 76-201, gnl|rn3|chr5 (19860886-19861031) | |
| 76-201, gnl|tetNig1|chrUn_random (134285909-134285777) | |
| 76-201, gnl|xenTro1|scaffold_8 (3374460-3374613) | |
| 284-439, gnl|bosTau2|chr14 (13057542-13057697) | |
| 284-439, gnl|Hg17|chr8 (59661721-59661562) | |
| 284-439, gnl|Mm7|chr4 (6326106-6325947) | |
| 639-1308, gnl|bosTau2|chr14 (13059760-13060452) | |
| 639-1308, gnl|Hg17|chr8 (59659321-59658628) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-201, gnl|bosTau2|chr14 (13055333-13055458) | |
| 76-201, gnl|canFam2|chr29 (12380402-12380552) | |
| 76-201, gnl|danRer3|chrUn (100894671-100894828) | |
| 76-201, gnl|dasNov1|scaffold_16471 (7878-8028) | |
| 76-201, gnl|echTel1|scaffold_47323 (633-482) | |
| 76-201, gnl|fr1|chrUn (223538641-223538497) | |
| 76-201, gnl|galGal2|chr2 (111340554-111340696) | |
| 76-201, gnl|hg17|chr8 (59664564-59664709) | |
| 76-201, gnl|Hg17|chr8 (59664688-59664563) | |
| 76-201, gnl|loxAfr1|scaffold_11936 (40438-40288) | |
| 76-201, gnl|mm7|chr4 (6335704-6335849) | |
| 76-201, gnl|Mm7|chr4 (6335828-6335703) | |
| 76-201, gnl|monDom2|scaffold_4 (105051536-105051384) | |
| 76-201, gnl|oryCun1|scaffold_165127 (4359-4214) | |
| 76-201, gnl|panTro1|chr7 (61435441-61435586) | |
| 76-201, gnl|rheMac2|chr8 (61224576-61224721) | |
| 76-201, gnl|rn3|chr5 (19860886-19861031) | |
| 76-201, gnl|tetNig1|chrUn_random (134285909-134285777) | |
| 76-201, gnl|xenTro1|scaffold_8 (3374460-3374613) | |
| 284-439, gnl|bosTau2|chr14 (13057542-13057697) | |
| 284-439, gnl|Hg17|chr8 (59661721-59661562) | |
| 284-439, gnl|Mm7|chr4 (6326106-6325947) | |
| 639-1308, gnl|bosTau2|chr14 (13059760-13060452) | |
| 639-1308, gnl|Hg17|chr8 (59659321-59658628) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ese (0.126502) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ese (0.126502) |