Non-Coding RNA Search

Ss1.1-Ova1-OVRM10191G07.5

Sequence:


               
               GCGTGGTCGCGGCCGAGGTACCAAACGGAACTGGTTGAAAATGAGTGTTACCAAGTATTC
TTAGACCGCATTAACAGAGCTGATTATTGCCCTGAGTGTTACCCCGATAATCCTGCTAAT
AGAAGCCTTGTCCTTCCTTGGTCTTTCCCTCTTGAGTGGGCTCCCCAAAATCTTACCAGG
TGGACCTTTGAAAAAGCTTGCCACCCATTTCTTCTGGGTCCTCCACTGGTTAGAAAAAGA
ATACATGACTCTAGAGTGGCTGGTTTTAACCCTGCATTACAGTTAATTCTGACCAGAACA
GATAAAACCTTGAACAAAAAGCTTGGCCAAAGCAAGTAACTTCTTAAAACAGTCAAAATC
ATGGAGACGCTAGAGGGTGTTGTGCTAGTAGCCCAAGGAGGATGGAAAAATGACTCCTTT
CTAGATCTGATCCAGACTGTCACTACTTTGGGAAACTTCTTAAATTATTGGATCTGCTTC
CAGGGTCTATGCCTCTCTTGTTCAGCATGAGCATAATCAGTATTCCAAGCCAGACTGTTA
TGTAGAACCTGACTAATCCATGTTTCCTATGTTTTGGAGTTAGCTTTTTCCTCTTAAAAG
TCCCTACAGCCTAATTATTGACATTATGATTTCACAGAAGTCCCGGAGGAGAAGCCCCAT
ACTCTGTGTACCATAATGATATTTCTAGTGATAACTTCTGTGGGAAAGCATCCTTGTAGC
TGGATTCTAGATTATTCCAGTAAAACAACTAGACACTTTAATAAGAAACTACATTGCTCT
AAATTTCACCTCTTATATATTAATCAGTGATAAATATATATGTGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGGTCGCGGCCGAGGTACCAAACGGAACTGGTTGAAAATGAGTGTTACCAAGTATTC
TTAGACCGCATTAACAGAGCTGATTATTGCCCTGAGTGTTACCCCGATAATCCTGCTAAT
AGAAGCCTTGTCCTTCCTTGGTCTTTCCCTCTTGAGTGGGCTCCCCAAAATCTTACCAGG
TGGACCTTTGAAAAAGCTTGCCACCCATTTCTTCTGGGTCCTCCACTGGTTAGAAAAAGA
ATACATGACTCTAGAGTGGCTGGTTTTAACCCTGCATTACAGTTAATTCTGACCAGAACA
GATAAAACCTTGAACAAAAAGCTTGGCCAAAGCAAGTAACTTCTTAAAACAGTCAAAATC
ATGGAGACGCTAGAGGGTGTTGTGCTAGTAGCCCAAGGAGGATGGAAAAATGACTCCTTT
CTAGATCTGATCCAGACTGTCACTACTTTGGGAAACTTCTTAAATTATTGGATCTGCTTC
CAGGGTCTATGCCTCTCTTGTTCAGCATGAGCATAATCAGTATTCCAAGCCAGACTGTTA
TGTAGAACCTGACTAATCCATGTTTCCTATGTTTTGGAGTTAGCTTTTTCCTCTTAAAAG
TCCCTACAGCCTAATTATTGACATTATGATTTCACAGAAGTCCCGGAGGAGAAGCCCCAT
ACTCTGTGTACCATAATGATATTTCTAGTGATAACTTCTGTGGGAAAGCATCCTTGTAGC
TGGATTCTAGATTATTCCAGTAAAACAACTAGACACTTTAATAAGAAACTACATTGCTCT
AAATTTCACCTCTTATATATTAATCAGTGATAAATATATATGTGTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26344888|dbj|BAC36093.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26344888|dbj|BAC36093.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               137-256, - strand, RNAz p=0.758087

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-256, - strand, RNAz p=0.758087

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               18-821, gnl|bosTau2|chr16 (45760355-45759555)
               

               
               18-821, gnl|Hg17|chr1 (176565894-176565077)
               

               
               18-821, gnl|Mm7|chr1 (156013842-156014741)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-821, gnl|bosTau2|chr16 (45760355-45759555)
               

               
               18-821, gnl|Hg17|chr1 (176565894-176565077)
               

               
               18-821, gnl|Mm7|chr1 (156013842-156014741)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eru (0.120048)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	18-821, gnl\|bosTau2\|chr16 (45760355-45759555)
	18-821, gnl\|Hg17\|chr1 (176565894-176565077)
	18-821, gnl\|Mm7\|chr1 (156013842-156014741)