Ss1.1-Ova1-OVRM10192E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAGAGGATGGAAGTGGCCGGCGGCCCCAGGGCTCCAGAGCCTGGGGAGATCCGGGCT CTAAAACAGTGTCTGCTGAGCCGCAATCAAAGCCGGGAACAGTATGGCGTGGCAGCCTCC TCCCTGGAGGAGCTGAGGAACAAGGCCTGTGACATTCTGGCCATTGATAAGTCCCTGGCA CCCGTCACCCTGGTCCTGGCAGAGGATGGAACCATAGTGGATGATGAAGATTACTTCCTG TGTCTTCCTGCCAACACGAAGTTCGTGGCGTTGGCTGGTAATGAGAAGTGGGCGTACAAC AATTCAGATGGAGGCACAGCTTGGATTGCCCAGGAGTCCTCTGATAGAGATGAAACAGAC AGCGGGCCGGGGTCGAAGTGGAAAAACGTGGCCAGGCAGCTGAAAGAAGACCTGTCCAGC ATCATCCTCCTGTCGGAGGAGGACCTCCAAATGCTCATCGATGTTCCATGTTCGGAGCTG GCTGTGGAGCTGTGCCAAAGCTGCGTCGCGGTTCAGGGGCTCCAGAACATGCTCCAGCAG GTGCTTGACCAGAGAGAGGAAGCCCGTCAGTCCAAGCAGCTCTTGGAGCTTTACCTCCAG GCTTTGGAGAAGGAGGGCTGCGTCTTGTCGAAGCAGCAAGAGTCCAGAGCCGGCTACGGT GATGAGAGGGATGCAGTTGACTCGGGCATCAGAGAGAGAGCCTCCGCAATTGCGCTCTCG AGACAGGTCCTTATCGCGCTGAAGGAGAAGCCCGCCCCAGAGCTGAGTTTGTCTAATCAG GACCTGGAGGTGGGCGAGCACCAGGGACCTTGACCTGTGCAGGGAGAGGCTTGTATTGGG TTCTTTCACCTCTGCAGACCCTGACTCATCGCTGCCAATTTGCCTGTTATATGCAAAGCA TTCGCAAACATCTTATTTAATGTAAATCTTAAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAGAGGATGGAAGTGGCCGGCGGCCCCAGGGCTCCAGAGCCTGGGGAGATCCGGGCT CTAAAACAGTGTCTGCTGAGCCGCAATCAAAGCCGGGAACAGTATGGCGTGGCAGCCTCC TCCCTGGAGGAGCTGAGGAACAAGGCCTGTGACATTCTGGCCATTGATAAGTCCCTGGCA CCCGTCACCCTGGTCCTGGCAGAGGATGGAACCATAGTGGATGATGAAGATTACTTCCTG TGTCTTCCTGCCAACACGAAGTTCGTGGCGTTGGCTGGTAATGAGAAGTGGGCGTACAAC AATTCAGATGGAGGCACAGCTTGGATTGCCCAGGAGTCCTCTGATAGAGATGAAACAGAC AGCGGGCCGGGGTCGAAGTGGAAAAACGTGGCCAGGCAGCTGAAAGAAGACCTGTCCAGC ATCATCCTCCTGTCGGAGGAGGACCTCCAAATGCTCATCGATGTTCCATGTTCGGAGCTG GCTGTGGAGCTGTGCCAAAGCTGCGTCGCGGTTCAGGGGCTCCAGAACATGCTCCAGCAG GTGCTTGACCAGAGAGAGGAAGCCCGTCAGTCCAAGCAGCTCTTGGAGCTTTACCTCCAG GCTTTGGAGAAGGAGGGCTGCGTCTTGTCGAAGCAGCAAGAGTCCAGAGCCGGCTACGGT GATGAGAGGGATGCAGTTGACTCGGGCATCAGAGAGAGAGCCTCCGCAATTGCGCTCTCG AGACAGGTCCTTATCGCGCTGAAGGAGAAGCCCGCCCCAGAGCTGAGTTTGTCTAATCAG GACCTGGAGGTGGGCGAGCACCAGGGACCTTGACCTGTGCAGGGAGAGGCTTGTATTGGG TTCTTTCACCTCTGCAGACCCTGACTCATCGCTGCCAATTTGCCTGTTATATGCAAAGCA TTCGCAAACATCTTATTTAATGTAAATCTTAAAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-120, - strand, RNAz p=0.635048 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, - strand, RNAz p=0.635048 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr16 (31897402-31897260) | |
| 1-143, gnl|canFam2|chr2 (88348343-88348480) | |
| 1-143, gnl|dasNov1|scaffold_53183 (4095-3956) | |
| 1-143, gnl|echTel1|scaffold_312360 (42555-42704) | |
| 1-143, gnl|Hg17|chr1 (10466790-10466648) | |
| 1-143, gnl|hg17|chr8 (1665765-1665913) | |
| 1-143, gnl|mm7|chr4 (148093782-148093928) | |
| 1-143, gnl|Mm7|chr4 (148093787-148093926) | |
| 1-143, gnl|oryCun1|scaffold_184091 (5201-5091) | |
| 1-143, gnl|panTro1|chr7 (1743703-1743851) | |
| 1-143, gnl|rheMac2|chr8 (1558354-1558502) | |
| 1-143, gnl|rn3|chr5 (166189375-166189521) | |
| 145-307, gnl|bosTau2|chr16 (31895425-31895266) | |
| 145-307, gnl|canFam2|chr2 (88349928-88350089) | |
| 145-307, gnl|dasNov1|scaffold_53183 (3955-3797) | |
| 145-307, gnl|echTel1|scaffold_312360 (44230-44383) | |
| 145-307, gnl|Hg17|chr1 (10463662-10463500) | |
| 145-307, gnl|hg17|chr8 (1665914-1666070) | |
| 145-307, gnl|mm7|chr4 (148095694-148095855) | |
| 145-307, gnl|Mm7|chr4 (148095693-148095855) | |
| 145-307, gnl|oryCun1|scaffold_184091 (3167-3008) | |
| 145-307, gnl|panTro1|chr7 (1743852-1744008) | |
| 145-307, gnl|rheMac2|chr8 (1558503-1558659) | |
| 145-307, gnl|rn3|chr5 (166191135-166191296) | |
| 639-899, gnl|bosTau2|chr16 (31889181-31888917) | |
| 639-899, gnl|Hg17|chr1 (10457534-10457244) | |
| 639-899, gnl|Mm7|chr4 (148107312-148107605) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr16 (31897402-31897260) | |
| 1-143, gnl|canFam2|chr2 (88348343-88348480) | |
| 1-143, gnl|dasNov1|scaffold_53183 (4095-3956) | |
| 1-143, gnl|echTel1|scaffold_312360 (42555-42704) | |
| 1-143, gnl|Hg17|chr1 (10466790-10466648) | |
| 1-143, gnl|hg17|chr8 (1665765-1665913) | |
| 1-143, gnl|mm7|chr4 (148093782-148093928) | |
| 1-143, gnl|Mm7|chr4 (148093787-148093926) | |
| 1-143, gnl|oryCun1|scaffold_184091 (5201-5091) | |
| 1-143, gnl|panTro1|chr7 (1743703-1743851) | |
| 1-143, gnl|rheMac2|chr8 (1558354-1558502) | |
| 1-143, gnl|rn3|chr5 (166189375-166189521) | |
| 145-307, gnl|bosTau2|chr16 (31895425-31895266) | |
| 145-307, gnl|canFam2|chr2 (88349928-88350089) | |
| 145-307, gnl|dasNov1|scaffold_53183 (3955-3797) | |
| 145-307, gnl|echTel1|scaffold_312360 (44230-44383) | |
| 145-307, gnl|Hg17|chr1 (10463662-10463500) | |
| 145-307, gnl|hg17|chr8 (1665914-1666070) | |
| 145-307, gnl|mm7|chr4 (148095694-148095855) | |
| 145-307, gnl|Mm7|chr4 (148095693-148095855) | |
| 145-307, gnl|oryCun1|scaffold_184091 (3167-3008) | |
| 145-307, gnl|panTro1|chr7 (1743852-1744008) | |
| 145-307, gnl|rheMac2|chr8 (1558503-1558659) | |
| 145-307, gnl|rn3|chr5 (166191135-166191296) | |
| 639-899, gnl|bosTau2|chr16 (31889181-31888917) | |
| 639-899, gnl|Hg17|chr1 (10457534-10457244) | |
| 639-899, gnl|Mm7|chr4 (148107312-148107605) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| col (0.195008) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pla (0.133672) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pla (0.133672) | |
| eje (0.0988338) |