Non-Coding RNA Search

Ss1.1-Ova1-OVRM10193C10.5

Sequence:


               
               TCCAGCACCATGCCAAGCCCAACTGCTTCTGCAAAGACCCAGACATCAACATGCACCCCT
TCTTCTTTGCCTTGGGGAAAATCCTCTCTGTGGAGCTTGGGAAACAGAAGAAAAAGTACA
TGCCATACGACCACCAGCACAAATACTTCTTCTTGATTGGGCCCCCAGCCTTGCTGCCTG
CCTACTTCCAGTGGTATATTTTCTATTTTGTTATCAAGAGGAAGAAGTGGGTGGACTTGG
CCTGGATGACGTCCTTCTATGTGCGCATCTTCCTCACTTATGTGCCACTGTTGGGGCTGA
AGGGCTCCCTGGGCCTCCTCTTCCTGGTCAGGTTCCTAGAAAGCAACTGGTTCGTGTGGG
TGACACAGATGAACCACATCCCCATGCACATCGATCACGACCGGAACGTGGACTGGTTCT
CCATGCAGGTCCGGGCAACGTGCAACGTCCACAAGTCGGCCTTCAATGATTGGTTCAGTG
GCCACCTCAACTTCCAGATTGAGCACCATCTTTTCCCCAGGATGCCGCGACACAACTACC
ACAAAGTGGCTCCCCTGGTGCAGTCCCTGTGTGCCAAGCATGGTATAGAGTACCAGTCCA
AGCCCCTGCTCTCGGCCTTCGCCGACATTGTGCACTCACTGAAGGAGTCCGGGCAACTCT
GGCTGGATGCCTATCTTCACCAGTAACAGCAGCCTCCCATCTGGAAGAAGAGCCTTGGAG
CCAAAACAGAGTGGGGCTTGGGGACAATGCCACTACCATCCTAGTATTCAGAGGGGATGG
GTTTGAGATGAAGGCTGTGACTCAAACCCCTCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCACCATGCCAAGCCCAACTGCTTCTGCAAAGACCCAGACATCAACATGCACCCCT
TCTTCTTTGCCTTGGGGAAAATCCTCTCTGTGGAGCTTGGGAAACAGAAGAAAAAGTACA
TGCCATACGACCACCAGCACAAATACTTCTTCTTGATTGGGCCCCCAGCCTTGCTGCCTG
CCTACTTCCAGTGGTATATTTTCTATTTTGTTATCAAGAGGAAGAAGTGGGTGGACTTGG
CCTGGATGACGTCCTTCTATGTGCGCATCTTCCTCACTTATGTGCCACTGTTGGGGCTGA
AGGGCTCCCTGGGCCTCCTCTTCCTGGTCAGGTTCCTAGAAAGCAACTGGTTCGTGTGGG
TGACACAGATGAACCACATCCCCATGCACATCGATCACGACCGGAACGTGGACTGGTTCT
CCATGCAGGTCCGGGCAACGTGCAACGTCCACAAGTCGGCCTTCAATGATTGGTTCAGTG
GCCACCTCAACTTCCAGATTGAGCACCATCTTTTCCCCAGGATGCCGCGACACAACTACC
ACAAAGTGGCTCCCCTGGTGCAGTCCCTGTGTGCCAAGCATGGTATAGAGTACCAGTCCA
AGCCCCTGCTCTCGGCCTTCGCCGACATTGTGCACTCACTGAAGGAGTCCGGGCAACTCT
GGCTGGATGCCTATCTTCACCAGTAACAGCAGCCTCCCATCTGGAAGAAGAGCCTTGGAG
CCAAAACAGAGTGGGGCTTGGGGACAATGCCACTACCATCCTAGTATTCAGAGGGGATGG
GTTTGAGATGAAGGCTGTGACTCAAACCCCTCCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26328979|dbj|BAC28228.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26328979|dbj|BAC28228.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               712-816, + strand, RNAz p=0.983692

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               712-816, + strand, RNAz p=0.983692

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AK074754, +
               

               
               3' of AL512760, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK074754, +
               

               
               3' of AL512760, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-525, gnl|bosTau2|chr14 (20547594-20547090)
               

               
               1-525, gnl|Hg17|chr11 (61372241-61387834)
               


               
               635-816, gnl|bosTau2|chr29 (31734041-31733857)
               

               
               635-816, gnl|Hg17|chr11 (61326510-61326311)
               

               
               635-816, gnl|Mm7|chr19 (9874996-9875186)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-525, gnl|bosTau2|chr14 (20547594-20547090)
               

               
               1-525, gnl|Hg17|chr11 (61372241-61387834)
               


               
               635-816, gnl|bosTau2|chr29 (31734041-31733857)
               

               
               635-816, gnl|Hg17|chr11 (61326510-61326311)
               

               
               635-816, gnl|Mm7|chr19 (9874996-9875186)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-525, gnl\|bosTau2\|chr14 (20547594-20547090)
	1-525, gnl\|Hg17\|chr11 (61372241-61387834)

	635-816, gnl\|bosTau2\|chr29 (31734041-31733857)
	635-816, gnl\|Hg17\|chr11 (61326510-61326311)
	635-816, gnl\|Mm7\|chr19 (9874996-9875186)