Non-Coding RNA Search

Ss1.1-Ova1-OVRM10193E04.5

Sequence:


               
               CGAGCAGGAGGCCGGAGTGGGTTCTCGCCACGCTGGCCTGGAGGGGAGCGGGGAGAGAGC
CGCTGACTGGAGGGGAGCGGGGAGAGAGCCGCTGACAGAGGGCCACTGACAGGAGATAAC
CCAGCTGTGGTCCCCAGAGCCTGCAATTTCAAGGCTTCCTCCCTGCCTCTACTGTGAGCC
CCGAGACCTGCACCTTAGCCAGAGTTCATCATGGGGAACCACTTGACTGAGATGGCGCCC
ACCGCCTCCTTCTTGCCCCACTTCCAGGCCCTGCACGTTGTGGTCATTGGGCTGGACTCG
GCTGGAAAGACCTCCCTTCTTTACCGCCTCAAGTTCAAGGAGTTTGTCCAGAGTGTCCCC
ACTAAAGGCTTCAACACAGAGAAGATCCGGGTGCCCCTGGGGGGGTCCCGTGGCATCACT
TTCCAAGTGTGGGACGTTGGGGGGCAGGAGAAGCTTCGACCGCTGTGGCGTTCCTACACA
CGCCGGACAGATGGGCTGGTGTTTGTGGTGGATGCCGCTGAGGCCGAGCGGCTGGAGGAG
GCCAAGGTGGAGCTACACAGGATCAGCCGGGCTTCGGACAACCAGGGTGTGCCTGTGCTG
GTGCTGGCCAACAAGCAGGATCAGCCTGGGGCACTGAGCGCAGCCGAGGTGGAGAAGAGG
CTGGCAGTTCGAGAGCTGGCTGCTGCCACACTCACCCATGTGCAGGGCTGCAGTGCCGTG
GACGGGCTGGGCCTGCAGCCAGGCCTGGAGCGCCTGTATGAGATGATCCTCAAGAGAAAG
AAGACTGCCCGGGCAGGCAAGAAGAGACGGTGACTCGAGACTGCCCCGACCTCACCAGCA
GGGGTCTGCACGCTTGGACAGCCAGGCAGAGCCTGTGGCCCCTCACTCAGCCCCAGGGTG
CAAGACCTGTCCACCTCAGAGCAGGACCAAGGAGCACACTGGGGTTCCTGCTTGGGGGCA
GCTCCCTGGGAGGGCTCTCACATCTTTCCCTCACCCTCACTTCTGGAGAAGTGGAGGCTG
CAGGACTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCAGGAGGCCGGAGTGGGTTCTCGCCACGCTGGCCTGGAGGGGAGCGGGGAGAGAGC
CGCTGACTGGAGGGGAGCGGGGAGAGAGCCGCTGACAGAGGGCCACTGACAGGAGATAAC
CCAGCTGTGGTCCCCAGAGCCTGCAATTTCAAGGCTTCCTCCCTGCCTCTACTGTGAGCC
CCGAGACCTGCACCTTAGCCAGAGTTCATCATGGGGAACCACTTGACTGAGATGGCGCCC
ACCGCCTCCTTCTTGCCCCACTTCCAGGCCCTGCACGTTGTGGTCATTGGGCTGGACTCG
GCTGGAAAGACCTCCCTTCTTTACCGCCTCAAGTTCAAGGAGTTTGTCCAGAGTGTCCCC
ACTAAAGGCTTCAACACAGAGAAGATCCGGGTGCCCCTGGGGGGGTCCCGTGGCATCACT
TTCCAAGTGTGGGACGTTGGGGGGCAGGAGAAGCTTCGACCGCTGTGGCGTTCCTACACA
CGCCGGACAGATGGGCTGGTGTTTGTGGTGGATGCCGCTGAGGCCGAGCGGCTGGAGGAG
GCCAAGGTGGAGCTACACAGGATCAGCCGGGCTTCGGACAACCAGGGTGTGCCTGTGCTG
GTGCTGGCCAACAAGCAGGATCAGCCTGGGGCACTGAGCGCAGCCGAGGTGGAGAAGAGG
CTGGCAGTTCGAGAGCTGGCTGCTGCCACACTCACCCATGTGCAGGGCTGCAGTGCCGTG
GACGGGCTGGGCCTGCAGCCAGGCCTGGAGCGCCTGTATGAGATGATCCTCAAGAGAAAG
AAGACTGCCCGGGCAGGCAAGAAGAGACGGTGACTCGAGACTGCCCCGACCTCACCAGCA
GGGGTCTGCACGCTTGGACAGCCAGGCAGAGCCTGTGGCCCCTCACTCAGCCCCAGGGTG
CAAGACCTGTCCACCTCAGAGCAGGACCAAGGAGCACACTGGGGTTCCTGCTTGGGGGCA
GCTCCCTGGGAGGGCTCTCACATCTTTCCCTCACCCTCACTTCTGGAGAAGTGGAGGCTG
CAGGACTGTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5REU3_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5REU3_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               497-616, - strand, RNAz p=0.54802
               

               
               657-776, + strand, RNAz p=0.573615

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               497-616, - strand, RNAz p=0.54802
               

               
               657-776, + strand, RNAz p=0.573615

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-1032, gnl|bosTau2|chr19 (42448134-42449069)
               

               
               114-1032, gnl|Hg17|chr17 (38832553-38833471)
               

               
               114-1032, gnl|Mm7|chr11 (101775585-101776508)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-1032, gnl|bosTau2|chr19 (42448134-42449069)
               

               
               114-1032, gnl|Hg17|chr17 (38832553-38833471)
               

               
               114-1032, gnl|Mm7|chr11 (101775585-101776508)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               lnt (0.142308)

	497-616, - strand, RNAz p=0.54802
	657-776, + strand, RNAz p=0.573615

	114-1032, gnl\|bosTau2\|chr19 (42448134-42449069)
	114-1032, gnl\|Hg17\|chr17 (38832553-38833471)
	114-1032, gnl\|Mm7\|chr11 (101775585-101776508)