Non-Coding RNA Search

Ss1.1-Ova1-OVRM10194D05.5

Sequence:


               
               GACACCGAGACAGCGCCGGGGCGGAGGAGGCGATGGAGAATTTCACGGCGCTGTTCGGAG
CTCAGGCTGACCCACCACCGCCCCCGACCGCACTTGGCTTCGGACCTGGAAAACCTCCAC
CCCCACCGCCTCCTCCTCCGGGCGGGGGGCCGGGCCCCGCCCCGCCCTCTACCGCGGCCA
CAGCCGCTCCCGGCTCCGACAAGTCAGCGGCCGGTTGTGGCCCCTTCTACCTAATGCGGG
AACTGCCGGGCAGCACAGAGCTGACTGGCAGCACTAATCTGATCACACACTACAACCTGG
AACATTCCTATAATAAATTCTGTGGGAAGAAAGTGAAGGAGAAGCTAAGTAACTTCCTGC
CTGACCTGCCAGGGATGATTGATCTGCCTGGTTCCCATGACAACAGCAGCCTCCGCTCCC
TCATTGAGAAGCCCCCTATTCTTGGTGGCTCTTTTAATCCTATCACAGGGACCATGCTGG
CTGGTTTTCGCCTCCACACTGGCCCGTTGCCAGAACAGTGTCGTCTGATGCATATTCAGC
CTCCCAAGAAGAAGAATAAGCACAAGCACAAACAGAGCCGTACCCAAGATCCTGTCCCCC
CAGAAACACCATCTGATTCAGATCACAAGAAAAAGAAAAAGAAAAAAGAAGAGGATCCTG
AACGGAAAAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACCGAGACAGCGCCGGGGCGGAGGAGGCGATGGAGAATTTCACGGCGCTGTTCGGAG
CTCAGGCTGACCCACCACCGCCCCCGACCGCACTTGGCTTCGGACCTGGAAAACCTCCAC
CCCCACCGCCTCCTCCTCCGGGCGGGGGGCCGGGCCCCGCCCCGCCCTCTACCGCGGCCA
CAGCCGCTCCCGGCTCCGACAAGTCAGCGGCCGGTTGTGGCCCCTTCTACCTAATGCGGG
AACTGCCGGGCAGCACAGAGCTGACTGGCAGCACTAATCTGATCACACACTACAACCTGG
AACATTCCTATAATAAATTCTGTGGGAAGAAAGTGAAGGAGAAGCTAAGTAACTTCCTGC
CTGACCTGCCAGGGATGATTGATCTGCCTGGTTCCCATGACAACAGCAGCCTCCGCTCCC
TCATTGAGAAGCCCCCTATTCTTGGTGGCTCTTTTAATCCTATCACAGGGACCATGCTGG
CTGGTTTTCGCCTCCACACTGGCCCGTTGCCAGAACAGTGTCGTCTGATGCATATTCAGC
CTCCCAAGAAGAAGAATAAGCACAAGCACAAACAGAGCCGTACCCAAGATCCTGTCCCCC
CAGAAACACCATCTGATTCAGATCACAAGAAAAAGAAAAAGAAAAAAGAAGAGGATCCTG
AACGGAAAAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IV02_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IV02_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-510, - strand, RNAz p=0.746012

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-510, - strand, RNAz p=0.746012

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               246-510, gnl|bosTau2|chr15 (50454233-50454497)
               

               
               246-510, gnl|Hg17|chr11 (57229281-57229017)
               

               
               246-510, gnl|Mm7|chr2 (84528903-84529167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-510, gnl|bosTau2|chr15 (50454233-50454497)
               

               
               246-510, gnl|Hg17|chr11 (57229281-57229017)
               

               
               246-510, gnl|Mm7|chr2 (84528903-84529167)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               clu (0.358938)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	246-510, gnl\|bosTau2\|chr15 (50454233-50454497)
	246-510, gnl\|Hg17\|chr11 (57229281-57229017)
	246-510, gnl\|Mm7\|chr2 (84528903-84529167)

	clu (0.358938)
	cut (0.169924)
	nje (0.16592)
	cty (0.10408)
	jej (0.0989218)