Non-Coding RNA Search

Ss1.1-Ova1-OVRM10194H11.5

Sequence:


               
               AAAGGGCCCGGTCCCGCCGAGGCTCGAGCGGCCGTCGCCATTTTGTAGGGTTCTCTCTGA
CGCGGGAGCCGCCGCCACCGCCGCCGCCACCCGGAGGCTCTTGTCAGGATGGTAAAGCTG
TTCATTGGGAACCTGCCCCGGGAGGCCACAGAGCAGGAGATCCGCTCACTGTTCGAGCAG
TATGGGAAGGTGCTGGAATGTGACATCATTAAGAACTACGGCTTTGTACACATAGAGGAC
AAGACGGCGGCCGAGGATGCCATTCGCAACCTGCACCACTACAAGCTGCACGGGGTGAAC
ATCAACGTGGAAGCCAGCAAGAATAAGAGCAAAGCTTCAACCAAGTTGCATGTGGGCAAC
ATCAGTCCTACTTGTACCAACCAAGAGCTTCGGGCCAAATTTGAGGAGTACGGTCCAGTC
ATCGAATGTGACATCGTGAAAGATTATGCCTTCGTACACATGGAGCGGGCAGAGGATGCG
GTGGAGGCCATCAGGGGCCTTGACAACACAGAGTTTCAAGGCAAACGCATGCACGTGCAG
TTGTCCACTAGCCGGCTTCGGACTGCGCCCGGGATGGGAGACCAGAGCGGCTGCTATCGG
TGTGGGAAAGAGGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCG
GACTTCACCGAACAGTACAATGAACAGTACGGAGCAGTGCGTCCACCTTACACCATGGGC
TACGGGGAATCCATGTATTACAACGATGCATATGGAGCGCTCGACTACTATAAGCGTTAC
CGAGTCCGCTCTTATGAGGCAGTGGCGGCGGCAGCAGCAGCTTCCGCGTACAACTACGCA
GAGCAGACCATGTCCCATCTGCCTCAAGTCCAGAGCACAGCTGTGACCAGTCACCTCAAC
TCCACTTCCGTTGATCCCTACGACAGACACCTGTTGCCTAACTCAGGCGCTGCTGCCACT
TCAGCTGCTATGGCTGCTGCCGCTGCCACCACTTCCTCCTATTATGGAAGGGACAGGAGC
CCCCTACGTCGCGCTGCAGCTGTGCTCCCCACAGTTGGAGAAGGATACGGTTATGGGCCA
GAAAGCGAGTTGTCTCAGGCTTCAGCAGCGGCACGGAATTCTCTGTATGACATGGCCCGG
TATGAGCGGGAGCAGTATGTGGACCGAGCACGGTATTCAGCCTTTTAAAAACTGGAGGTA
GGATAATTGCGGACTGAACCCTCGGGCTGCGGTCATATATGAGAACTTGCTCCGCGCGGT
CCCCTTTGCCGGGATGTTTCCATTGCTTCATGTTTCAGTAAACAAAGGAGTTTGTGACCA
ACTATGTTTTCTTTCTTAATTTAATTCTTCTAAGTTGACTCTTCTTTCCTCCTGATACTA
GTCTTTGTAGCCTTTCACTCTGTTCCTTATATTCTCAGCCTCTGAGCAGCCCTAGGTAAG
GATTATGCTGGCATCCCCTTTTTCCTGTACAGTGGAACCCCCTCTTATCTTGCTTTCCTT
AGGAGTTGAACCCTTCTCCCTATCTACCTGCAACATCTCCTTTCCCTTATTAAAATGACC
ATGTAGTGGCAAGCAACCTTTTGCTCTTCTCTGTTAGCTCTGGACTCTAACATTGAAGCT
AATCTTCTGAAATTGCTAGGACCATTGGGGTTTTGGTTGTTGTTTTGTTTGTTTGTTTTG
TTTTTTTTGTCTGACCTGTGATCGTGATGCAGCATTAGCTGAAATTTAGCCTTGTTTTAC
TCCACTCCTCCCATTTTTTTTTAATATATTTTGACAAATAAACGTTTCTAACACTTAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGGCCCGGTCCCGCCGAGGCTCGAGCGGCCGTCGCCATTTTGTAGGGTTCTCTCTGA
CGCGGGAGCCGCCGCCACCGCCGCCGCCACCCGGAGGCTCTTGTCAGGATGGTAAAGCTG
TTCATTGGGAACCTGCCCCGGGAGGCCACAGAGCAGGAGATCCGCTCACTGTTCGAGCAG
TATGGGAAGGTGCTGGAATGTGACATCATTAAGAACTACGGCTTTGTACACATAGAGGAC
AAGACGGCGGCCGAGGATGCCATTCGCAACCTGCACCACTACAAGCTGCACGGGGTGAAC
ATCAACGTGGAAGCCAGCAAGAATAAGAGCAAAGCTTCAACCAAGTTGCATGTGGGCAAC
ATCAGTCCTACTTGTACCAACCAAGAGCTTCGGGCCAAATTTGAGGAGTACGGTCCAGTC
ATCGAATGTGACATCGTGAAAGATTATGCCTTCGTACACATGGAGCGGGCAGAGGATGCG
GTGGAGGCCATCAGGGGCCTTGACAACACAGAGTTTCAAGGCAAACGCATGCACGTGCAG
TTGTCCACTAGCCGGCTTCGGACTGCGCCCGGGATGGGAGACCAGAGCGGCTGCTATCGG
TGTGGGAAAGAGGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCG
GACTTCACCGAACAGTACAATGAACAGTACGGAGCAGTGCGTCCACCTTACACCATGGGC
TACGGGGAATCCATGTATTACAACGATGCATATGGAGCGCTCGACTACTATAAGCGTTAC
CGAGTCCGCTCTTATGAGGCAGTGGCGGCGGCAGCAGCAGCTTCCGCGTACAACTACGCA
GAGCAGACCATGTCCCATCTGCCTCAAGTCCAGAGCACAGCTGTGACCAGTCACCTCAAC
TCCACTTCCGTTGATCCCTACGACAGACACCTGTTGCCTAACTCAGGCGCTGCTGCCACT
TCAGCTGCTATGGCTGCTGCCGCTGCCACCACTTCCTCCTATTATGGAAGGGACAGGAGC
CCCCTACGTCGCGCTGCAGCTGTGCTCCCCACAGTTGGAGAAGGATACGGTTATGGGCCA
GAAAGCGAGTTGTCTCAGGCTTCAGCAGCGGCACGGAATTCTCTGTATGACATGGCCCGG
TATGAGCGGGAGCAGTATGTGGACCGAGCACGGTATTCAGCCTTTTAAAAACTGGAGGTA
GGATAATTGCGGACTGAACCCTCGGGCTGCGGTCATATATGAGAACTTGCTCCGCGCGGT
CCCCTTTGCCGGGATGTTTCCATTGCTTCATGTTTCAGTAAACAAAGGAGTTTGTGACCA
ACTATGTTTTCTTTCTTAATTTAATTCTTCTAAGTTGACTCTTCTTTCCTCCTGATACTA
GTCTTTGTAGCCTTTCACTCTGTTCCTTATATTCTCAGCCTCTGAGCAGCCCTAGGTAAG
GATTATGCTGGCATCCCCTTTTTCCTGTACAGTGGAACCCCCTCTTATCTTGCTTTCCTT
AGGAGTTGAACCCTTCTCCCTATCTACCTGCAACATCTCCTTTCCCTTATTAAAATGACC
ATGTAGTGGCAAGCAACCTTTTGCTCTTCTCTGTTAGCTCTGGACTCTAACATTGAAGCT
AATCTTCTGAAATTGCTAGGACCATTGGGGTTTTGGTTGTTGTTTTGTTTGTTTGTTTTG
TTTTTTTTGTCTGACCTGTGATCGTGATGCAGCATTAGCTGAAATTTAGCCTTGTTTTAC
TCCACTCCTCCCATTTTTTTTTAATATATTTTGACAAATAAACGTTTCTAACACTTAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55732548|emb|CAH92974.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55732548|emb|CAH92974.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               222-904, gnl|bosTau2|chr19 (43481152-43480520)
               

               
               222-904, gnl|Hg17|chr8 (99986957-99986271)
               

               
               222-904, gnl|Mm7|chr19 (4652177-4657166)
               


               
               936-1548, gnl|bosTau2|chr19 (43480353-43479734)
               

               
               936-1548, gnl|Hg17|chr8 (99986239-99985652)
               

               
               936-1548, gnl|Mm7|chr19 (4657198-4660483)
               


               
               1685-1808, gnl|bosTau2|chr19 (43479429-43479306)
               

               
               1685-1808, gnl|Hg17|chr8 (99985520-99985402)
               

               
               1685-1808, gnl|Mm7|chr19 (4660635-4660746)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-904, gnl|bosTau2|chr19 (43481152-43480520)
               

               
               222-904, gnl|Hg17|chr8 (99986957-99986271)
               

               
               222-904, gnl|Mm7|chr19 (4652177-4657166)
               


               
               936-1548, gnl|bosTau2|chr19 (43480353-43479734)
               

               
               936-1548, gnl|Hg17|chr8 (99986239-99985652)
               

               
               936-1548, gnl|Mm7|chr19 (4657198-4660483)
               


               
               1685-1808, gnl|bosTau2|chr19 (43479429-43479306)
               

               
               1685-1808, gnl|Hg17|chr8 (99985520-99985402)
               

               
               1685-1808, gnl|Mm7|chr19 (4660635-4660746)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               hyp (0.42851)
               

               
               ton (0.351)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               ton (0.351)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               nca (0.273748)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	222-904, gnl\|bosTau2\|chr19 (43481152-43480520)
	222-904, gnl\|Hg17\|chr8 (99986957-99986271)
	222-904, gnl\|Mm7\|chr19 (4652177-4657166)

	936-1548, gnl\|bosTau2\|chr19 (43480353-43479734)
	936-1548, gnl\|Hg17\|chr8 (99986239-99985652)
	936-1548, gnl\|Mm7\|chr19 (4657198-4660483)

	1685-1808, gnl\|bosTau2\|chr19 (43479429-43479306)
	1685-1808, gnl\|Hg17\|chr8 (99985520-99985402)
	1685-1808, gnl\|Mm7\|chr19 (4660635-4660746)

	hyp (0.42851)
	ton (0.351)
	mcp (0.341297)
	fhi (0.339155)
	sme (0.305437)
	ski (0.29347)
	nca (0.273748)
	nmm (0.265604)
	kid (0.259471)
	sug (0.254582)
	ece (0.229305)
	spc (0.226732)
	hea (0.204499)
	nlu (0.191681)
	eye (0.170503)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	hlv (0.139256)
	cov (0.132153)
	ova (0.129132)
	thg (0.126791)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)