Non-Coding RNA Search

Ss1.1-Ova1-OVRM10195A02.5

Sequence:


               
               CTTAACCGTTAGAAGAACCAAGCCCAAAAAACGGAAAAAGAGTCCAGAAAAGGGTCGTGC
AGCACCAAAGACGAAGAAAATCAAGAATTCTCCTTCTGAAGCACAGAATTTAGATGAGAA
TACAACTGAGGGATGGGAAAATCGGATAAGACTATGGACTGATCAGTATGAAGAAGCCTT
CACTAATCAGTACAGTGCAGATGTACAGAACGCCCTTGAACAACATCTTCATTCTAGCAA
GGAATTTGTGGGCAAACCTGCTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAA
TAATACAGTTATTGGTTCCCAAATGCAGCTACAGTTGGGAAGAGTCACTCGTGTTCAAAA
GCACCGGAAAATCTTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTCATAATAGAGTA
TCGAGGCAAAGTCATGTTACGGCAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAGTA
AGAACATCCTTCTTGGAGCATTGAGGTTCAAAGTGGGTCTGGCTGAGCTGTGGATGCACG
TACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGGTGCG
ACATATGATTGCAGATGGGATGATTCACCTCTGTATCTATGCTGTGTCTGCCATCACCAA
GGATGCTGAGGTCACCATAGCATTTGATTATGAGTATAGTAACTGTAATTATAAAGTGGA
CTGTGCATGTCACAAGGGGAACCGGAATTGCCCAATACAAAAAAGAAATCCCAATGCTGC
AGAACTGCCACTTCCACCTCCTCCAAGCCTACCCACCATCGGAGCAGAGACAAGGCGTAG
AAAAGCACGACGGAAAGAGCTAGAGATGGAGCAGCAGAATGAGGCTCCAGAAGAGGATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAACCGTTAGAAGAACCAAGCCCAAAAAACGGAAAAAGAGTCCAGAAAAGGGTCGTGC
AGCACCAAAGACGAAGAAAATCAAGAATTCTCCTTCTGAAGCACAGAATTTAGATGAGAA
TACAACTGAGGGATGGGAAAATCGGATAAGACTATGGACTGATCAGTATGAAGAAGCCTT
CACTAATCAGTACAGTGCAGATGTACAGAACGCCCTTGAACAACATCTTCATTCTAGCAA
GGAATTTGTGGGCAAACCTGCTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAA
TAATACAGTTATTGGTTCCCAAATGCAGCTACAGTTGGGAAGAGTCACTCGTGTTCAAAA
GCACCGGAAAATCTTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTCATAATAGAGTA
TCGAGGCAAAGTCATGTTACGGCAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAGTA
AGAACATCCTTCTTGGAGCATTGAGGTTCAAAGTGGGTCTGGCTGAGCTGTGGATGCACG
TACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGGTGCG
ACATATGATTGCAGATGGGATGATTCACCTCTGTATCTATGCTGTGTCTGCCATCACCAA
GGATGCTGAGGTCACCATAGCATTTGATTATGAGTATAGTAACTGTAATTATAAAGTGGA
CTGTGCATGTCACAAGGGGAACCGGAATTGCCCAATACAAAAAAGAAATCCCAATGCTGC
AGAACTGCCACTTCCACCTCCTCCAAGCCTACCCACCATCGGAGCAGAGACAAGGCGTAG
AAAAGCACGACGGAAAGAGCTAGAGATGGAGCAGCAGAATGAGGCTCCAGAAGAGGATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|54648462|gb|AAH84951.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|54648462|gb|AAH84951.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-202, + strand, RNAz p=0.563904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-202, + strand, RNAz p=0.563904

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               84-331, gnl|bosTau2|chr22 (14571696-14571449)
               

               
               84-331, gnl|Hg17|chr3 (9457138-9457385)
               

               
               84-331, gnl|Mm7|chr6 (113275770-113276017)
               


               
               658-900, gnl|bosTau2|chr22 (14568509-14568271)
               

               
               658-900, gnl|Hg17|chr3 (9461689-9461929)
               

               
               658-900, gnl|Mm7|chr6 (113278256-113278490)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-331, gnl|bosTau2|chr22 (14571696-14571449)
               

               
               84-331, gnl|Hg17|chr3 (9457138-9457385)
               

               
               84-331, gnl|Mm7|chr6 (113275770-113276017)
               


               
               658-900, gnl|bosTau2|chr22 (14568509-14568271)
               

               
               658-900, gnl|Hg17|chr3 (9461689-9461929)
               

               
               658-900, gnl|Mm7|chr6 (113278256-113278490)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.300978)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               jca (0.11396)

	84-331, gnl\|bosTau2\|chr22 (14571696-14571449)
	84-331, gnl\|Hg17\|chr3 (9457138-9457385)
	84-331, gnl\|Mm7\|chr6 (113275770-113276017)

	658-900, gnl\|bosTau2\|chr22 (14568509-14568271)
	658-900, gnl\|Hg17\|chr3 (9461689-9461929)
	658-900, gnl\|Mm7\|chr6 (113278256-113278490)