Non-Coding RNA Search

Ss1.1-Ova1-OVRM10195A12.5

Sequence:


               
               AGACGCGCGCGCGATCTTGCTCGGACCCGGGGCCGCCGCCGCCGCCGCCGCCGCCATCAC
CGTCGTCCGCTCAGTCACCCCTCAGCCGCTTCCCCTGGCCATGGAGGCGAGGCCGCCGCC
GCCGCCGCGGGGCTCCGAGCCGCGGGCCGGGCGGCGGCCCTGAGGGCGTGTGGCGGGCCG
AGACGCCGCCGCGGCACCGAGGCGGAGCCGCCGTCCTCGTCCCCGGCGATCCCGCCCAAC
GCCGGACTCGTTGCAGGTGGCGGAACCGAAAAAAGTTATTTATGAATTCCAATGAGTGGA
GATGGATGATGCAGTTCAAATAACTAAGGTCAGCATGGATTCCTGGTTCCTTCTTGTTCT
GCTGGGCAGTGGTCTGATACATGCTGGTGCCAGCAACACTACCACAGTTTCACCTTCAGT
AGGCGTTACAAGATCTATTAAAGCAACTACAGCAGAATCATTTAAAGAAGAGACCAAAAC
TTCAAATCCTACTTCTTCAGTAACTTCTCCTTCCTTGGCACCAACATTCAGCCCAAATCT
AACTCTGGGACCCACCTATGTAACAACCACTGTCAATTCTTCAGACTCTGACAATGGGAC
CACAAGAACAGTGAGCACCAATTCTGTAGTCACTACAGTTTCACCAAATGGAACATGGCA
TGTAGATACCAGAACAGAACCTTGGGAGGGGAATGCCAGCACTGCAGCAACCACTCCGGA
AACTTTTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGCGCGCGCGATCTTGCTCGGACCCGGGGCCGCCGCCGCCGCCGCCGCCGCCATCAC
CGTCGTCCGCTCAGTCACCCCTCAGCCGCTTCCCCTGGCCATGGAGGCGAGGCCGCCGCC
GCCGCCGCGGGGCTCCGAGCCGCGGGCCGGGCGGCGGCCCTGAGGGCGTGTGGCGGGCCG
AGACGCCGCCGCGGCACCGAGGCGGAGCCGCCGTCCTCGTCCCCGGCGATCCCGCCCAAC
GCCGGACTCGTTGCAGGTGGCGGAACCGAAAAAAGTTATTTATGAATTCCAATGAGTGGA
GATGGATGATGCAGTTCAAATAACTAAGGTCAGCATGGATTCCTGGTTCCTTCTTGTTCT
GCTGGGCAGTGGTCTGATACATGCTGGTGCCAGCAACACTACCACAGTTTCACCTTCAGT
AGGCGTTACAAGATCTATTAAAGCAACTACAGCAGAATCATTTAAAGAAGAGACCAAAAC
TTCAAATCCTACTTCTTCAGTAACTTCTCCTTCCTTGGCACCAACATTCAGCCCAAATCT
AACTCTGGGACCCACCTATGTAACAACCACTGTCAATTCTTCAGACTCTGACAATGGGAC
CACAAGAACAGTGAGCACCAATTCTGTAGTCACTACAGTTTCACCAAATGGAACATGGCA
TGTAGATACCAGAACAGAACCTTGGGAGGGGAATGCCAGCACTGCAGCAACCACTCCGGA
AACTTTTCCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JWG3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JWG3_HUMAN

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               24-253, gnl|bosTau2|chr13 (41443856-41444084)
               

               
               24-253, gnl|canFam2|chr24 (21392724-21392507)
               

               
               24-253, gnl|dasNov1|scaffold_21638 (39615-39409)
               

               
               24-253, gnl|echTel1|scaffold_297668 (4933-5156)
               

               
               24-253, gnl|hg17|chr20 (2802106-2802324)
               

               
               24-253, gnl|Hg17|chr20 (2802182-2802409)
               

               
               24-253, gnl|loxAfr1|scaffold_29224 (11391-11173)
               

               
               24-253, gnl|mm7|chr2 (130191114-130191329)
               

               
               24-253, gnl|Mm7|chr2 (130191188-130191414)
               

               
               24-253, gnl|oryCun1|scaffold_192983 (18941-19168)
               

               
               24-253, gnl|panTro1|chr21 (2779156-2779374)
               

               
               24-253, gnl|rheMac2|chr10 (36182814-36183032)
               

               
               24-253, gnl|rn3|chr3 (117967247-117967462)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-253, gnl|bosTau2|chr13 (41443856-41444084)
               

               
               24-253, gnl|canFam2|chr24 (21392724-21392507)
               

               
               24-253, gnl|dasNov1|scaffold_21638 (39615-39409)
               

               
               24-253, gnl|echTel1|scaffold_297668 (4933-5156)
               

               
               24-253, gnl|hg17|chr20 (2802106-2802324)
               

               
               24-253, gnl|Hg17|chr20 (2802182-2802409)
               

               
               24-253, gnl|loxAfr1|scaffold_29224 (11391-11173)
               

               
               24-253, gnl|mm7|chr2 (130191114-130191329)
               

               
               24-253, gnl|Mm7|chr2 (130191188-130191414)
               

               
               24-253, gnl|oryCun1|scaffold_192983 (18941-19168)
               

               
               24-253, gnl|panTro1|chr21 (2779156-2779374)
               

               
               24-253, gnl|rheMac2|chr10 (36182814-36183032)
               

               
               24-253, gnl|rn3|chr3 (117967247-117967462)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ebs (0.236602)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               med (0.116252)

	24-253, gnl\|bosTau2\|chr13 (41443856-41444084)
	24-253, gnl\|canFam2\|chr24 (21392724-21392507)
	24-253, gnl\|dasNov1\|scaffold_21638 (39615-39409)
	24-253, gnl\|echTel1\|scaffold_297668 (4933-5156)
	24-253, gnl\|hg17\|chr20 (2802106-2802324)
	24-253, gnl\|Hg17\|chr20 (2802182-2802409)
	24-253, gnl\|loxAfr1\|scaffold_29224 (11391-11173)
	24-253, gnl\|mm7\|chr2 (130191114-130191329)
	24-253, gnl\|Mm7\|chr2 (130191188-130191414)
	24-253, gnl\|oryCun1\|scaffold_192983 (18941-19168)
	24-253, gnl\|panTro1\|chr21 (2779156-2779374)
	24-253, gnl\|rheMac2\|chr10 (36182814-36183032)
	24-253, gnl\|rn3\|chr3 (117967247-117967462)