Non-Coding RNA Search

Ss1.1-Ova1-OVRM10196D08.5

Sequence:


               
               CCGATCTTTGACAGGCGTGGCAGAGGGAGCGGTACCCGACCACGGGTTCTCTTCAGAATT
TTGTGGCGTGAAGCTGTAGGGGTCAGGCTTGGCCATGGACCCACTCTCAGAGCTGCAGGA
CGACCTGACCGTGGATGACACCAGCCAGGCCCTGAACCAGCTGAAGCTAGCCTCCATTGA
CGAGAAGAACTGGCCCTCAGATGAAATGCCCGACTTTCCCAAATCAGATGACTCCAAAAG
CAGCTCCCCGGAACCTGTCACGCACCTGAAGTGGGATGACCCGTATTACGACATCGCCCG
GCACCAGATTGTGGAGGTGGCAGGAGATGACAAGTATGGGCGGAAGATCATTGTGTTTAG
TGCCTGCCGAATGCCCCCAAGTCACCAGCTGGACCACAGCAAGCTCCTGGGGTGAGTACC
ATGGGAAGTGGGAGGACCTGTGCCCAGATTCTCACTCCAGCCTGGTGCCATTTTCCTTAC
TGTCTCTTCCTGCCCTGGAGTTACCAAGCCACCTCCCTCAAGGCCCCCCTTTTCTGCTGA
GGGAGCCCCTTTACACTGGGAAGAGAGCGCTGGGTTAGGAGTCAGACCTGGTTCTAGTCC
TAGAAACCATCCTTGTGACCTTGGCAAGTGTCTTCACGTCTTTAAGCTCTTTATCTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGATCTTTGACAGGCGTGGCAGAGGGAGCGGTACCCGACCACGGGTTCTCTTCAGAATT
TTGTGGCGTGAAGCTGTAGGGGTCAGGCTTGGCCATGGACCCACTCTCAGAGCTGCAGGA
CGACCTGACCGTGGATGACACCAGCCAGGCCCTGAACCAGCTGAAGCTAGCCTCCATTGA
CGAGAAGAACTGGCCCTCAGATGAAATGCCCGACTTTCCCAAATCAGATGACTCCAAAAG
CAGCTCCCCGGAACCTGTCACGCACCTGAAGTGGGATGACCCGTATTACGACATCGCCCG
GCACCAGATTGTGGAGGTGGCAGGAGATGACAAGTATGGGCGGAAGATCATTGTGTTTAG
TGCCTGCCGAATGCCCCCAAGTCACCAGCTGGACCACAGCAAGCTCCTGGGGTGAGTACC
ATGGGAAGTGGGAGGACCTGTGCCCAGATTCTCACTCCAGCCTGGTGCCATTTTCCTTAC
TGTCTCTTCCTGCCCTGGAGTTACCAAGCCACCTCCCTCAAGGCCCCCCTTTTCTGCTGA
GGGAGCCCCTTTACACTGGGAAGAGAGCGCTGGGTTAGGAGTCAGACCTGGTTCTAGTCC
TAGAAACCATCCTTGTGACCTTGGCAAGTGTCTTCACGTCTTTAAGCTCTTTATCTTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877321|ref|XP_605423.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877321|ref|XP_605423.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               44-230, gnl|bosTau2|chr15 (48460658-48460473)
               

               
               44-230, gnl|Hg17|chr11 (46674283-46674098)
               

               
               44-230, gnl|Mm7|chr2 (91504765-91504926)
               


               
               322-541, gnl|bosTau2|chr15 (48453609-48453375)
               

               
               322-541, gnl|Hg17|chr11 (46666388-46666172)
               

               
               322-541, gnl|Mm7|chr2 (91513012-91513222)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-230, gnl|bosTau2|chr15 (48460658-48460473)
               

               
               44-230, gnl|Hg17|chr11 (46674283-46674098)
               

               
               44-230, gnl|Mm7|chr2 (91504765-91504926)
               


               
               322-541, gnl|bosTau2|chr15 (48453609-48453375)
               

               
               322-541, gnl|Hg17|chr11 (46666388-46666172)
               

               
               322-541, gnl|Mm7|chr2 (91513012-91513222)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eru (0.120048)

	44-230, gnl\|bosTau2\|chr15 (48460658-48460473)
	44-230, gnl\|Hg17\|chr11 (46674283-46674098)
	44-230, gnl\|Mm7\|chr2 (91504765-91504926)

	322-541, gnl\|bosTau2\|chr15 (48453609-48453375)
	322-541, gnl\|Hg17\|chr11 (46666388-46666172)
	322-541, gnl\|Mm7\|chr2 (91513012-91513222)