Non-Coding RNA Search

Ss1.1-Ova1-OVRM10196G05.5

Sequence:


               
               GGAAGAAGAAGATGAAGAAGGAAGTGAGTCAGTAAACAAGAGGAAAAAGGAAGATGACAT
GGAGACCAAGAAAGACCATCCTTACACTTGGAGAATTGAACTGGCAAAAACAGAAAAATA
CTGGGATGGCTGGTTCCGAGGCTTATCCAATCTCTTTCTTAGTTGTCCTATTCCTAAATT
GCTGCTCTTGGCTGGTGTTGATAGATTGGATAAAGATCTGACTATTGGCCAAATGCAAGG
AAAGTTCCAGATGCAGGTCTTACCCCAGTGTGGCCACGCGGTCCATGAGGATGCCCCAGA
CAAGGTCGCTGAAGCGGTTGCCACTTTCCTGATCCGGCACAGGTTTGCAGAGCCCATCGG
CGGATTCCAGTGTGTGTTTCCTGGCTGTTAGTGACCTGCTCTGCATCCCTCCTTCGACAC
TGAGCTCTGTTGTAAATACATCGCACCAGAGGCCACTGTGACGCCGCTGTCTCCTCCTCA
CCGTCCTGCCCGCCCACGTGACACCGGCTCCCTATAGACGGGCATCCCCAGATGTACAAA
CCCTTTCGTGTATTCCTGCCAAAAGCATTGGTTTTCCAGGGCCTTTGACCAACATCAGCC
TCACCAGTCTAAGGGTCTGCAGCTCCTGTCCCTTCCCTGTGCAGGGGTCGCCCCAGCCTG
TCCTCCCTGCCTGGCCCTGGGTGAAGCCTCTAACAGAACTGCCACCCCGGGCCCTACTCC
TGGCATTAGGCAGGGCCCTGTGTGCAGGCATTTCCCTGCTCAGGGACCTCCATTCCTTGA
GGTTGTTCTTGCCGCGGTCCTGCCGTTCCTTGTGGGACGGACCATGTACACAGGGTGGTC
TTTATTTTTCCTTTATAAATAAACACCAGTCAGGTACCTTTGTGTCCCAGTCTTGCTCTT
CTAGGCTTGCAAGTCTCAGAGAGGCCAGGATCCCATCCTTAGGTACAGGGCAGGGCAGTG
GGTAGCGTCACCAGAACCCAGCCTGAAAATCAGGCCCCGCCCGTCCAAGCACATGGCCTC
CCCTCTTGGGACAGTCCATCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAAGAAGATGAAGAAGGAAGTGAGTCAGTAAACAAGAGGAAAAAGGAAGATGACAT
GGAGACCAAGAAAGACCATCCTTACACTTGGAGAATTGAACTGGCAAAAACAGAAAAATA
CTGGGATGGCTGGTTCCGAGGCTTATCCAATCTCTTTCTTAGTTGTCCTATTCCTAAATT
GCTGCTCTTGGCTGGTGTTGATAGATTGGATAAAGATCTGACTATTGGCCAAATGCAAGG
AAAGTTCCAGATGCAGGTCTTACCCCAGTGTGGCCACGCGGTCCATGAGGATGCCCCAGA
CAAGGTCGCTGAAGCGGTTGCCACTTTCCTGATCCGGCACAGGTTTGCAGAGCCCATCGG
CGGATTCCAGTGTGTGTTTCCTGGCTGTTAGTGACCTGCTCTGCATCCCTCCTTCGACAC
TGAGCTCTGTTGTAAATACATCGCACCAGAGGCCACTGTGACGCCGCTGTCTCCTCCTCA
CCGTCCTGCCCGCCCACGTGACACCGGCTCCCTATAGACGGGCATCCCCAGATGTACAAA
CCCTTTCGTGTATTCCTGCCAAAAGCATTGGTTTTCCAGGGCCTTTGACCAACATCAGCC
TCACCAGTCTAAGGGTCTGCAGCTCCTGTCCCTTCCCTGTGCAGGGGTCGCCCCAGCCTG
TCCTCCCTGCCTGGCCCTGGGTGAAGCCTCTAACAGAACTGCCACCCCGGGCCCTACTCC
TGGCATTAGGCAGGGCCCTGTGTGCAGGCATTTCCCTGCTCAGGGACCTCCATTCCTTGA
GGTTGTTCTTGCCGCGGTCCTGCCGTTCCTTGTGGGACGGACCATGTACACAGGGTGGTC
TTTATTTTTCCTTTATAAATAAACACCAGTCAGGTACCTTTGTGTCCCAGTCTTGCTCTT
CTAGGCTTGCAAGTCTCAGAGAGGCCAGGATCCCATCCTTAGGTACAGGGCAGGGCAGTG
GGTAGCGTCACCAGAACCCAGCCTGAAAATCAGGCCCCGCCCGTCCAAGCACATGGCCTC
CCCTCTTGGGACAGTCCATCGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6560626|gb|AAF16692.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6560626|gb|AAF16692.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               571-885, - strand, RNAz p=0.998417
               

               
               930-1044, + strand, RNAz p=0.53029

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               571-885, - strand, RNAz p=0.998417
               

               
               930-1044, + strand, RNAz p=0.53029

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX537528, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX537528, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               63-196, gnl|bosTau2|chr15 (34132069-34132202)
               

               
               63-196, gnl|canFam2|chr21 (27053445-27053302)
               

               
               63-196, gnl|danRer3|chr21 (12511325-12511477)
               

               
               63-196, gnl|dasNov1|scaffold_5797 (50119-50268)
               

               
               63-196, gnl|echTel1|scaffold_156926 (9084-8935)
               

               
               63-196, gnl|fr1|chrUn (77446332-77446196)
               

               
               63-196, gnl|galGal2|chr1 (187088143-187088003)
               

               
               63-196, gnl|hg17|chr11 (73634767-73634921)
               

               
               63-196, gnl|Hg17|chr11 (73634767-73634900)
               

               
               63-196, gnl|mm7|chr7 (96381423-96381272)
               

               
               63-196, gnl|Mm7|chr7 (96381421-96381288)
               

               
               63-196, gnl|monDom2|scaffold_74 (3206245-3206092)
               

               
               63-196, gnl|oryCun1|scaffold_195978 (15041-15171)
               

               
               63-196, gnl|panTro1|chr9 (74918703-74918857)
               

               
               63-196, gnl|rheMac2|chr14 (72433780-72433934)
               

               
               63-196, gnl|rn3|chr1 (157814391-157814240)
               

               
               63-196, gnl|tetNig1|chr7 (5483599-5483734)
               

               
               63-196, gnl|xenTro1|scaffold_1234 (124569-124706)
               


               
               372-1044, gnl|bosTau2|chr15 (34136839-34137512)
               

               
               372-1044, gnl|Hg17|chr11 (73642184-73642851)
               

               
               372-1044, gnl|Mm7|chr7 (96374125-96373509)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-196, gnl|bosTau2|chr15 (34132069-34132202)
               

               
               63-196, gnl|canFam2|chr21 (27053445-27053302)
               

               
               63-196, gnl|danRer3|chr21 (12511325-12511477)
               

               
               63-196, gnl|dasNov1|scaffold_5797 (50119-50268)
               

               
               63-196, gnl|echTel1|scaffold_156926 (9084-8935)
               

               
               63-196, gnl|fr1|chrUn (77446332-77446196)
               

               
               63-196, gnl|galGal2|chr1 (187088143-187088003)
               

               
               63-196, gnl|hg17|chr11 (73634767-73634921)
               

               
               63-196, gnl|Hg17|chr11 (73634767-73634900)
               

               
               63-196, gnl|mm7|chr7 (96381423-96381272)
               

               
               63-196, gnl|Mm7|chr7 (96381421-96381288)
               

               
               63-196, gnl|monDom2|scaffold_74 (3206245-3206092)
               

               
               63-196, gnl|oryCun1|scaffold_195978 (15041-15171)
               

               
               63-196, gnl|panTro1|chr9 (74918703-74918857)
               

               
               63-196, gnl|rheMac2|chr14 (72433780-72433934)
               

               
               63-196, gnl|rn3|chr1 (157814391-157814240)
               

               
               63-196, gnl|tetNig1|chr7 (5483599-5483734)
               

               
               63-196, gnl|xenTro1|scaffold_1234 (124569-124706)
               


               
               372-1044, gnl|bosTau2|chr15 (34136839-34137512)
               

               
               372-1044, gnl|Hg17|chr11 (73642184-73642851)
               

               
               372-1044, gnl|Mm7|chr7 (96374125-96373509)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	571-885, - strand, RNAz p=0.998417
	930-1044, + strand, RNAz p=0.53029

	63-196, gnl\|bosTau2\|chr15 (34132069-34132202)
	63-196, gnl\|canFam2\|chr21 (27053445-27053302)
	63-196, gnl\|danRer3\|chr21 (12511325-12511477)
	63-196, gnl\|dasNov1\|scaffold_5797 (50119-50268)
	63-196, gnl\|echTel1\|scaffold_156926 (9084-8935)
	63-196, gnl\|fr1\|chrUn (77446332-77446196)
	63-196, gnl\|galGal2\|chr1 (187088143-187088003)
	63-196, gnl\|hg17\|chr11 (73634767-73634921)
	63-196, gnl\|Hg17\|chr11 (73634767-73634900)
	63-196, gnl\|mm7\|chr7 (96381423-96381272)
	63-196, gnl\|Mm7\|chr7 (96381421-96381288)
	63-196, gnl\|monDom2\|scaffold_74 (3206245-3206092)
	63-196, gnl\|oryCun1\|scaffold_195978 (15041-15171)
	63-196, gnl\|panTro1\|chr9 (74918703-74918857)
	63-196, gnl\|rheMac2\|chr14 (72433780-72433934)
	63-196, gnl\|rn3\|chr1 (157814391-157814240)
	63-196, gnl\|tetNig1\|chr7 (5483599-5483734)
	63-196, gnl\|xenTro1\|scaffold_1234 (124569-124706)

	372-1044, gnl\|bosTau2\|chr15 (34136839-34137512)
	372-1044, gnl\|Hg17\|chr11 (73642184-73642851)
	372-1044, gnl\|Mm7\|chr7 (96374125-96373509)