Ss1.1-Ova1-OVRM10199C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACTGGAGACTCACCTCATCAGGCCCTGCTGCAGTGGGAGCAGGGAGAGTAGCAGTGGT AGGGGCAGCATGCTGGCCAGGGGGCTTGCCCTCCGCTCAGTCCTGGTCAAAGGCTGCCAG CCCTTCCTGAGTGCCCCTCGGGAGTGCCCAGGGCATCCCAGGGTGGGCACTGGAGAGGGA GCATGCATCTCCACTAAAACCCCTCGCCCCTTCAGTGAAATCCCCTCTCCTGGTGACAAT GGCTGGATTAACCTGTACCGTTTCTGGAAGGAGAAGGGCACACAGAAAATCCACTATCAC CATGTCCAGAACTTCCAGAAGTATGGTCCCATTTACAGGGAGAAGCTCGGCAACTTGGAA TCTGTTTATATCATCGACCCTGAAGATGTGGCCCTTCTCTTTAAGTTCGAAGGACCCAAC CCAGAACGATACAACATCCCGCCCTGGGTTGCCTATCACCAGCATTACCAGAAGCCTGTT GGGGTCCTGCTGAAGAAGTCAGGAGCCTGGAAGAAAGACCGGTTGGTCCTGAACACGGAG GTAATGGCTCCAGAGGCCATAAAGAACTTCATCCCCCTACTGGACACAGTGTCTCAGGAC TTCGTCGGCGTCCTGCACAGGCGCATCAAGCAGCAGGGTTCTGGAAAGTTCTCAGGTGAC ATCAGGGAAGACCTGTTTCGCTTCGCCTTTGAGTCCATCACCAATGTCATATTTGGAGAG CGCCTGGGGATGCTGGAGGAAATAGTGGACCCTGAGGCTCAGAAGTTCATTGATGCTGTC TACCAGATGTTCCACACTAGTGTCCCCATGCTCAATCTCCCCCCTGACCTGTTCCGTCTG TTCAGGACCAAGACCTGGAGGGACCATGTAGCCGCATGGGACACTATTTTCAATAAAGCT GAAAAATACACCCAGAACTTCTACTGGGACCTGAGACGGAAAAGAGAATTTAACAATTAC CCAGGCATCCTCTACCGCCTCCTGGGAAATGACAAGCTGCTCTCAGAAGATGTTAAGGCC AATGTTACCGAGATGCTGGCAGGGGGTGTAGACACGACATCCATGACTCTGCAATGGCAC TTGTATGAGATGGCACGTAGCCTGAATGTGCAGGAGATGCTGCGGGAGGAGGTCCTCAAT GCCCGGCGCCAGGCCCAAGGAGACACAAGCAAGATGCTGCAATTGGTCCCACTCCTCAAA GCTAGCATTAAGGAGACACTGAGACTCCACCCCATCTCCGTGACCCTGCAGAGATACCTC GTGAATGACTTGGTTCTTCGAGATTACATGATTCCTGCCAAGACATTGGTACAAGTGGCC ATCTATGCCATGGGCCGAGACCCCGCCTTCTTCTCAAATCCAGGCCAGTTTGACCCAACC CGGTGGTTGGGTAAAGAAAGGGACCTCATCCACTTCCGGAACTTGGGCTTTGGCTGGGGC GTGCGGCAGTGTGTGGGCCGGCGGATCGCTGAGCTCGAGATGACTCTCTTCCTCATCCAT ATTCTGGAGAACTTCAAGGTTGAATTGCAGCACTTCAGTGATGTGGACACCATATTCAAC CTCATCCTGATGCCGGACAAGCCCATCTTCCTTGTTTTCCGGCCCTTCAATCAGGATCCA CTCCAGGCATGATCGGAGAGGGTGGGCAACCCATTTCCTACCAACCAGGCTAGCAGGGGT GTGGGAGGATGGCCTGATGGGGTGGGGCCCATGGAAGTGTCTGTACCACCAGTGCTCGGT CCCTACCCCTGCTCCTTTCTGGCCAGCTCTGATCAGATAAAGTTGGTGCTCAGTAATCAG CTGCTCCAGTTCAGCTGAGGCACCCCTTCTTTCACTCCACTTCTTCATCCACTCCCATGA AGGCAATAAATAGCTGAACTATGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACTGGAGACTCACCTCATCAGGCCCTGCTGCAGTGGGAGCAGGGAGAGTAGCAGTGGT AGGGGCAGCATGCTGGCCAGGGGGCTTGCCCTCCGCTCAGTCCTGGTCAAAGGCTGCCAG CCCTTCCTGAGTGCCCCTCGGGAGTGCCCAGGGCATCCCAGGGTGGGCACTGGAGAGGGA GCATGCATCTCCACTAAAACCCCTCGCCCCTTCAGTGAAATCCCCTCTCCTGGTGACAAT GGCTGGATTAACCTGTACCGTTTCTGGAAGGAGAAGGGCACACAGAAAATCCACTATCAC CATGTCCAGAACTTCCAGAAGTATGGTCCCATTTACAGGGAGAAGCTCGGCAACTTGGAA TCTGTTTATATCATCGACCCTGAAGATGTGGCCCTTCTCTTTAAGTTCGAAGGACCCAAC CCAGAACGATACAACATCCCGCCCTGGGTTGCCTATCACCAGCATTACCAGAAGCCTGTT GGGGTCCTGCTGAAGAAGTCAGGAGCCTGGAAGAAAGACCGGTTGGTCCTGAACACGGAG GTAATGGCTCCAGAGGCCATAAAGAACTTCATCCCCCTACTGGACACAGTGTCTCAGGAC TTCGTCGGCGTCCTGCACAGGCGCATCAAGCAGCAGGGTTCTGGAAAGTTCTCAGGTGAC ATCAGGGAAGACCTGTTTCGCTTCGCCTTTGAGTCCATCACCAATGTCATATTTGGAGAG CGCCTGGGGATGCTGGAGGAAATAGTGGACCCTGAGGCTCAGAAGTTCATTGATGCTGTC TACCAGATGTTCCACACTAGTGTCCCCATGCTCAATCTCCCCCCTGACCTGTTCCGTCTG TTCAGGACCAAGACCTGGAGGGACCATGTAGCCGCATGGGACACTATTTTCAATAAAGCT GAAAAATACACCCAGAACTTCTACTGGGACCTGAGACGGAAAAGAGAATTTAACAATTAC CCAGGCATCCTCTACCGCCTCCTGGGAAATGACAAGCTGCTCTCAGAAGATGTTAAGGCC AATGTTACCGAGATGCTGGCAGGGGGTGTAGACACGACATCCATGACTCTGCAATGGCAC TTGTATGAGATGGCACGTAGCCTGAATGTGCAGGAGATGCTGCGGGAGGAGGTCCTCAAT GCCCGGCGCCAGGCCCAAGGAGACACAAGCAAGATGCTGCAATTGGTCCCACTCCTCAAA GCTAGCATTAAGGAGACACTGAGACTCCACCCCATCTCCGTGACCCTGCAGAGATACCTC GTGAATGACTTGGTTCTTCGAGATTACATGATTCCTGCCAAGACATTGGTACAAGTGGCC ATCTATGCCATGGGCCGAGACCCCGCCTTCTTCTCAAATCCAGGCCAGTTTGACCCAACC CGGTGGTTGGGTAAAGAAAGGGACCTCATCCACTTCCGGAACTTGGGCTTTGGCTGGGGC GTGCGGCAGTGTGTGGGCCGGCGGATCGCTGAGCTCGAGATGACTCTCTTCCTCATCCAT ATTCTGGAGAACTTCAAGGTTGAATTGCAGCACTTCAGTGATGTGGACACCATATTCAAC CTCATCCTGATGCCGGACAAGCCCATCTTCCTTGTTTTCCGGCCCTTCAATCAGGATCCA CTCCAGGCATGATCGGAGAGGGTGGGCAACCCATTTCCTACCAACCAGGCTAGCAGGGGT GTGGGAGGATGGCCTGATGGGGTGGGGCCCATGGAAGTGTCTGTACCACCAGTGCTCGGT CCCTACCCCTGCTCCTTTCTGGCCAGCTCTGATCAGATAAAGTTGGTGCTCAGTAATCAG CTGCTCCAGTTCAGCTGAGGCACCCCTTCTTTCACTCCACTTCTTCATCCACTCCCATGA AGGCAATAAATAGCTGAACTATGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 65-1848, - strand, RNAz p=0.802063 | |
| 709-902, + strand, RNAz p=0.946653 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 65-1848, - strand, RNAz p=0.802063 | |
| 709-902, + strand, RNAz p=0.946653 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 26-339, gnl|bosTau2|chr21 (23275509-23275196) | |
| 26-339, gnl|Hg17|chr15 (72447022-72446710) | |
| 26-339, gnl|Mm7|chr9 (58043225-58043520) | |
| 681-902, gnl|bosTau2|chr21 (23268397-23268176) | |
| 681-902, gnl|canFam2|chr30 (40478201-40478414) | |
| 681-902, gnl|danRer3|chr25 (7262558-7262348) | |
| 681-902, gnl|fr1|chrUn (68055245-68055032) | |
| 681-902, gnl|galGal2|chr10 (129249-129036) | |
| 681-902, gnl|hg17|chr15 (72423179-72423392) | |
| 681-902, gnl|Hg17|chr15 (72423411-72423179) | |
| 681-902, gnl|loxAfr1|scaffold_35589 (36322-36109) | |
| 681-902, gnl|mm7|chr9 (58047723-58047510) | |
| 681-902, gnl|Mm7|chr9 (58047489-58047721) | |
| 681-902, gnl|monDom2|scaffold_41 (3794547-3794334) | |
| 681-902, gnl|rheMac2|chr7 (53136934-53137147) | |
| 681-902, gnl|rn3|chr8 (61817693-61817480) | |
| 681-902, gnl|tetNig1|chr13 (7445134-7445345) | |
| 1056-1223, gnl|bosTau2|chr21 (23263088-23262921) | |
| 1056-1223, gnl|canFam2|chr30 (40474543-40474729) | |
| 1056-1223, gnl|danRer3|chr25 (7263639-7263467) | |
| 1056-1223, gnl|echTel1|scaffold_319933 (40891-41076) | |
| 1056-1223, gnl|fr1|chrUn (68055734-68055561) | |
| 1056-1223, gnl|galGal2|chr10 (130270-130085) | |
| 1056-1223, gnl|hg17|chr15 (72418978-72419164) | |
| 1056-1223, gnl|Hg17|chr15 (72419148-72418981) | |
| 1056-1223, gnl|mm7|chr9 (58053470-58053285) | |
| 1056-1223, gnl|Mm7|chr9 (58053298-58053465) | |
| 1056-1223, gnl|monDom2|scaffold_41 (3799426-3799247) | |
| 1056-1223, gnl|panTro1|chr16_random (21540776-21540962) | |
| 1056-1223, gnl|rheMac2|chr7 (53132345-53132531) | |
| 1056-1223, gnl|rn3|chr8 (61822775-61822590) | |
| 1056-1223, gnl|tetNig1|chr13 (7444649-7444822) | |
| 1498-1887, gnl|bosTau2|chr21 (23261526-23261126) | |
| 1498-1887, gnl|Hg17|chr15 (72417500-72417152) | |
| 1498-1887, gnl|Mm7|chr9 (58054912-58055245) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-339, gnl|bosTau2|chr21 (23275509-23275196) | |
| 26-339, gnl|Hg17|chr15 (72447022-72446710) | |
| 26-339, gnl|Mm7|chr9 (58043225-58043520) | |
| 681-902, gnl|bosTau2|chr21 (23268397-23268176) | |
| 681-902, gnl|canFam2|chr30 (40478201-40478414) | |
| 681-902, gnl|danRer3|chr25 (7262558-7262348) | |
| 681-902, gnl|fr1|chrUn (68055245-68055032) | |
| 681-902, gnl|galGal2|chr10 (129249-129036) | |
| 681-902, gnl|hg17|chr15 (72423179-72423392) | |
| 681-902, gnl|Hg17|chr15 (72423411-72423179) | |
| 681-902, gnl|loxAfr1|scaffold_35589 (36322-36109) | |
| 681-902, gnl|mm7|chr9 (58047723-58047510) | |
| 681-902, gnl|Mm7|chr9 (58047489-58047721) | |
| 681-902, gnl|monDom2|scaffold_41 (3794547-3794334) | |
| 681-902, gnl|rheMac2|chr7 (53136934-53137147) | |
| 681-902, gnl|rn3|chr8 (61817693-61817480) | |
| 681-902, gnl|tetNig1|chr13 (7445134-7445345) | |
| 1056-1223, gnl|bosTau2|chr21 (23263088-23262921) | |
| 1056-1223, gnl|canFam2|chr30 (40474543-40474729) | |
| 1056-1223, gnl|danRer3|chr25 (7263639-7263467) | |
| 1056-1223, gnl|echTel1|scaffold_319933 (40891-41076) | |
| 1056-1223, gnl|fr1|chrUn (68055734-68055561) | |
| 1056-1223, gnl|galGal2|chr10 (130270-130085) | |
| 1056-1223, gnl|hg17|chr15 (72418978-72419164) | |
| 1056-1223, gnl|Hg17|chr15 (72419148-72418981) | |
| 1056-1223, gnl|mm7|chr9 (58053470-58053285) | |
| 1056-1223, gnl|Mm7|chr9 (58053298-58053465) | |
| 1056-1223, gnl|monDom2|scaffold_41 (3799426-3799247) | |
| 1056-1223, gnl|panTro1|chr16_random (21540776-21540962) | |
| 1056-1223, gnl|rheMac2|chr7 (53132345-53132531) | |
| 1056-1223, gnl|rn3|chr8 (61822775-61822590) | |
| 1056-1223, gnl|tetNig1|chr13 (7444649-7444822) | |
| 1498-1887, gnl|bosTau2|chr21 (23261526-23261126) | |
| 1498-1887, gnl|Hg17|chr15 (72417500-72417152) | |
| 1498-1887, gnl|Mm7|chr9 (58054912-58055245) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cov (10.7044) | |
| cag (2.41911) | |
| tes (0.207814) | |
| pla (0.133672) | |
| sug (0.127291) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (10.7044) | |
| cag (2.41911) | |
| tes (0.207814) | |
| pla (0.133672) | |
| sug (0.127291) |