Ss1.1-Ova1-OVRM10199D10.5
|
AACCCACTCAGTCTTACCAGCTCACAGTGTTCAGCTGATCCTCCCCCTCATCCTTAGATC
TGTTCCTCAGGAGCTTCAGGTGGGAGGTGGGGACAGCAAGACTGTGGGGTGTTTGGGGTC
CAGAGCACAGGGGAGAGGGCCTCAGGTTTTCCATCTTCATCCTTTTGTTATTAGGAGAAG
GTGAGGTGCAGATCAGTCCTGCTCCTGCCTTCCTGTCCCCCTCCCCCAGTCTTCTGATCC
TGGGGCCGGGTGGTTCTTCTGTCCTGTCAGAAGTTTCCTCACCCCAGTAGTTCTGCCAGC
CTGGCCAAAGCTGGCTGGGTGGTTTCTTGGCGAGCGAGGAGTGGGGGTGACATAGCAGAC
CTCAATATCAATCCCCCTGTTCTCCAGTTCTTTCTACTCCAGAATGTGTTGAAGGATGCA
AATTGTCTGTTCTGTTTCCAGACCCTCAGACCATCCTACTGTTCCTACCTTTTCCGTCCC
AACCGTTTCCCCGGCCCTCTTCACCCACTTCCTGTAAATGGATCTGGGCATTGGGATGGA
GGAAATGGAGCTCTGAAGTGGTCGCTGGTGCTGTGGGATGCAGCAGGCTCAGAGTCTTCC
CTCCATCATGATGTAGTTGTTCAGAAGCTGCTGCTACTGTGTCTCTGGCTACAGGAGGCG
CTTGTCCCTGAGGTCCTGGCCTGGGTCCTGACTTCTGCGGTTTCTGTGAAGCCGTGGCTT
TTCTGTGGGCTCCTGTGTGTGCTGGCTGCGCCCTGAGCTCCAAGACAGCCGCCCATAACC
TTTCTGCTACGGTCAGGGCCCAGAACCCCCATAGCATGGCTGAGGGACCTTCCCTGAAGG
GCTGTCCCAAGCCCCACCCCATGGGGCCAGGCTTCCTGCCACCTTTGTCTACCACAGGCC
ATCAGTACCCCCTCCCTCACCCCAGCCTGAACCGTGAAAGAAAGGTTCCAGGGGTGTCCT
CCTCAGTGCCAGCTCCTTAGTAGTGTTTACCCAGGATGCAGTGGGTGTATGCAGGTCTCT
TGCTCTCTAGGCCTGTGTGTGTGTGTGGGTGTGGGTGTGTGTGGGTGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACCCACTCAGTCTTACCAGCTCACAGTGTTCAGCTGATCCTCCCCCTCATCCTTAGATC
TGTTCCTCAGGAGCTTCAGGTGGGAGGTGGGGACAGCAAGACTGTGGGGTGTTTGGGGTC
CAGAGCACAGGGGAGAGGGCCTCAGGTTTTCCATCTTCATCCTTTTGTTATTAGGAGAAG
GTGAGGTGCAGATCAGTCCTGCTCCTGCCTTCCTGTCCCCCTCCCCCAGTCTTCTGATCC
TGGGGCCGGGTGGTTCTTCTGTCCTGTCAGAAGTTTCCTCACCCCAGTAGTTCTGCCAGC
CTGGCCAAAGCTGGCTGGGTGGTTTCTTGGCGAGCGAGGAGTGGGGGTGACATAGCAGAC
CTCAATATCAATCCCCCTGTTCTCCAGTTCTTTCTACTCCAGAATGTGTTGAAGGATGCA
AATTGTCTGTTCTGTTTCCAGACCCTCAGACCATCCTACTGTTCCTACCTTTTCCGTCCC
AACCGTTTCCCCGGCCCTCTTCACCCACTTCCTGTAAATGGATCTGGGCATTGGGATGGA
GGAAATGGAGCTCTGAAGTGGTCGCTGGTGCTGTGGGATGCAGCAGGCTCAGAGTCTTCC
CTCCATCATGATGTAGTTGTTCAGAAGCTGCTGCTACTGTGTCTCTGGCTACAGGAGGCG
CTTGTCCCTGAGGTCCTGGCCTGGGTCCTGACTTCTGCGGTTTCTGTGAAGCCGTGGCTT
TTCTGTGGGCTCCTGTGTGTGCTGGCTGCGCCCTGAGCTCCAAGACAGCCGCCCATAACC
TTTCTGCTACGGTCAGGGCCCAGAACCCCCATAGCATGGCTGAGGGACCTTCCCTGAAGG
GCTGTCCCAAGCCCCACCCCATGGGGCCAGGCTTCCTGCCACCTTTGTCTACCACAGGCC
ATCAGTACCCCCTCCCTCACCCCAGCCTGAACCGTGAAAGAAAGGTTCCAGGGGTGTCCT
CCTCAGTGCCAGCTCCTTAGTAGTGTTTACCCAGGATGCAGTGGGTGTATGCAGGTCTCT
TGCTCTCTAGGCCTGTGTGTGTGTGTGGGTGTGGGTGTGTGTGGGTGT
|
|
1-340, - strand, RNAz p=0.970314 |
|
109-284, - strand, RNAz p=0.998787 |
|
381-648, - strand, RNAz p=0.99134 |
|
768-961, - strand, RNAz p=0.999602 |
|
802-916, - strand, RNAz p=0.989763 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-340, - strand, RNAz p=0.970314 |
|
109-284, - strand, RNAz p=0.998787 |
|
381-648, - strand, RNAz p=0.99134 |
|
768-961, - strand, RNAz p=0.999602 |
|
802-916, - strand, RNAz p=0.989763 |
|
822-933, - strand, RNAmicro p=0.997651 |
|
554-643, + strand, RNAmicro p=0.951502 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
822-933, - strand, RNAmicro p=0.997651 |
|
554-643, + strand, RNAmicro p=0.951502 |
|
109-284, BP457036 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP457036.1|), blast E-value=0, identity=100% |
|
109-284, 285335 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF775234.1|),
blast E-value=0, identity=98.86% |
|
120-184, LB0276.CR_H09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV895005.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
120-184, LB02822.CR_N07 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912038.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
120-184, LB02547.CR_N06 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344401.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
120-184, LB02749.CR_M04 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348273.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
768-927, BP146853 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP146853.1|), blast E-value=0, identity=100% |
|
768-961, BP458263 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP458263.1|), blast E-value=0, identity=100% |
|
768-961, DB786543 full-length enriched swine cDNA library, adult adrenal
(dbj|DB786543.1|), blast E-value=0, identity=99.48% |
|
768-933, DB796387 full-length enriched swine cDNA library, adult immature
(dbj|DB796387.1|), blast E-value=0, identity=98.8% |
|
768-958, LB02745.CR_G01 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE346928.1|),
blast E-value=0, identity=89.18% |
|
768-958, LB02751.CR_D16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348477.1|),
blast E-value=0, identity=89.18% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
109-284, BP457036 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP457036.1|), blast E-value=0, identity=100% |
|
109-284, 285335 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF775234.1|),
blast E-value=0, identity=98.86% |
|
120-184, LB0276.CR_H09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV895005.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
120-184, LB02822.CR_N07 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912038.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
120-184, LB02547.CR_N06 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344401.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
120-184, LB02749.CR_M04 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348273.1|),
blast E-value=0.00000000000001, identity=92.54% |
|
768-927, BP146853 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP146853.1|), blast E-value=0, identity=100% |
|
768-961, BP458263 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP458263.1|), blast E-value=0, identity=100% |
|
768-961, DB786543 full-length enriched swine cDNA library, adult adrenal
(dbj|DB786543.1|), blast E-value=0, identity=99.48% |
|
768-933, DB796387 full-length enriched swine cDNA library, adult immature
(dbj|DB796387.1|), blast E-value=0, identity=98.8% |
|
768-958, LB02745.CR_G01 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE346928.1|),
blast E-value=0, identity=89.18% |
|
768-958, LB02751.CR_D16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348477.1|),
blast E-value=0, identity=89.18% |
Human gene identifier and UTR site,
human gene reading direction
|
1-1067, gnl|bosTau2|chr5 (22531417-22532486) |
|
1-1067, gnl|canFam2|chr27 (8638650-8637430) |
|
1-1067, gnl|dasNov1|scaffold_3021 (57697-58906) |
|
1-1067, gnl|echTel1|scaffold_239314 (3574-4586) |
|
1-1067, gnl|hg17|chr12 (47616591-47617798) |
|
1-1067, gnl|Hg17|chr12 (47618153-47617070) |
|
1-1067, gnl|mm7|chr15 (98723464-98724763) |
|
1-1067, gnl|Mm7|chr15 (98725046-98723979) |
|
1-1067, gnl|oryCun1|scaffold_201837 (4-1189) |
|
1-1067, gnl|panTro1|chr10 (48789804-48791013) |
|
1-1067, gnl|rheMac2|chr11 (46061618-46062817) |
|
1-1067, gnl|rn3|chr7 (137581969-137583157) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1067, gnl|bosTau2|chr5 (22531417-22532486) |
|
1-1067, gnl|canFam2|chr27 (8638650-8637430) |
|
1-1067, gnl|dasNov1|scaffold_3021 (57697-58906) |
|
1-1067, gnl|echTel1|scaffold_239314 (3574-4586) |
|
1-1067, gnl|hg17|chr12 (47616591-47617798) |
|
1-1067, gnl|Hg17|chr12 (47618153-47617070) |
|
1-1067, gnl|mm7|chr15 (98723464-98724763) |
|
1-1067, gnl|Mm7|chr15 (98725046-98723979) |
|
1-1067, gnl|oryCun1|scaffold_201837 (4-1189) |
|
1-1067, gnl|panTro1|chr10 (48789804-48791013) |
|
1-1067, gnl|rheMac2|chr11 (46061618-46062817) |
|
1-1067, gnl|rn3|chr7 (137581969-137583157) |
|
ton (0.351) |
|
fli (0.202881) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
cty (0.10408) |
|
ton (0.351) |
|
fli (0.202881) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
cty (0.10408) |
