Ss1.1-Ova1-OVRM10199G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTGACAAAAGGACAATGTCTTTATTCGCGTTTCAAAAG TAAAGGCAGCAAGTGCAGGAATGGACTCGGACCGATCCTTCTAACAGTGGAAGGACCAGG GTCGGACAAGCTGTGGCTGGCTGAGGGCCAGCTGGCCGGTGGAGGCCAGGCGGCGGGGTA GAGGACAGACCACCAGGGAGGGCAGGCGGGGCCTCGAGTGCGGGGAGTGGGTGGGAGGCT GTGTGCAGGGCGCTGCTTTACAGATGCAAATCCAGATGGCCCTGCCTCCAGCCTCCCAGC TGGCGGGTACAGCAGAGAAGGGGGCCTCAGCCTCTCCACCTGGTGGGTGGAAGGCAGGGG CACCAGCGCGGCATGGTGGGGACCCCTGTGAATGTTGGGGGCAGTACAACCCCGCCTCCC CAAAGGCGCCATGCCCTTGCTCAGGCCCCAAGCTCGTGGCTCTCCCGGCCTGGGGGTCCC TTCGCGGACACACCAAAGAACCAAATCCTGCAGTCAGAGGCCCTGGGACCCTGCAGGACT CTTGACCCAGCTCTACCTGCCACTCCCCTGGAGCCTGGGGTCTGGGAAGGGGTCCACACC CAGTCGTGTGGTCAGGACCCGTCCCCTCTATTGCCCCAGACCTCAAGCAGTGCCTCCAGC AGCCCGCAGGCTGGAGAGTCCACGGGAGGGGCCAGGGAGGGAGAAAGGGAGGGGCTGGGG CCTGGGTCCGGCGCTGGCACCTTACTTCCTCATCTCCTTGGCCCGGCGCGTGGCGGCCTC CACCGCGCTCATGGCAGCCGCCCGCAGCCCGCCCTGCTCCAGCGCGTGCAGCCCGTAGAT GGTGGTACCGCCCGGCGTGCACACGTCGGTCCGCAGCTGAGCCGGGTGCTGCCCCTTCTG CAGAAGCATCTTGGCTGTCCCCAGCAGGGTCTGGGCAGCAATGCGGTATGCCAGGCCACT GGGCATGCCCATCTTGATGGCGCCTTCGGCCAAGGCCTCCGAGAAGGCACATACAAAGGC CACGCCGCTGCCGCTGAGGCCGGTGTGGGTGTCCACCTGGGCCTCGGGCACCTCCTCGCA CTGCCCGCAGGCCTCCAGCAGGGTCTGCAGGAGCTCGGCCTCGCTGTTCCCGGCGTGGCG GCCCCGCGCCAGCACCATGGCCCCCTCCTGGACCACGCAGGGCAGGTTCGGGGAGACCCG CAGCACTCGAGCGCCGGGAGGCAGCAGCTCCTCCATGGTGCTCAGGGGGACGCCGGCAGC CACGGATACCAGGATGTGCTCTGTGGTGACCACAGGCGCCACCTCCGCCAGGACGGCGGG CAGGACGTGGGGCTTGGTGGCGAAGATGACAAGGGAGCAGCTCTGCAGCACCTCGTGGTT GGAGTGGGTGGTCCGGCAGCCCAGGGCCCGGAAGTGGCAGAGGTTCCTGTCAGTGGGTGC GCTGGCCAGCACGTACTGGGCTTCCACTTTTCCTGCTCGGATGAGGCCTTGAGCGATCGC CTCCGCCATGCGGCCAGCGCCCACGAAGCCCACGCGCCGCGGGCCGGTCTCCGCCGCCGC CGCCATAACGCCGCGTCCAGGCGTCGGCCGGCCAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTGACAAAAGGACAATGTCTTTATTCGCGTTTCAAAAG TAAAGGCAGCAAGTGCAGGAATGGACTCGGACCGATCCTTCTAACAGTGGAAGGACCAGG GTCGGACAAGCTGTGGCTGGCTGAGGGCCAGCTGGCCGGTGGAGGCCAGGCGGCGGGGTA GAGGACAGACCACCAGGGAGGGCAGGCGGGGCCTCGAGTGCGGGGAGTGGGTGGGAGGCT GTGTGCAGGGCGCTGCTTTACAGATGCAAATCCAGATGGCCCTGCCTCCAGCCTCCCAGC TGGCGGGTACAGCAGAGAAGGGGGCCTCAGCCTCTCCACCTGGTGGGTGGAAGGCAGGGG CACCAGCGCGGCATGGTGGGGACCCCTGTGAATGTTGGGGGCAGTACAACCCCGCCTCCC CAAAGGCGCCATGCCCTTGCTCAGGCCCCAAGCTCGTGGCTCTCCCGGCCTGGGGGTCCC TTCGCGGACACACCAAAGAACCAAATCCTGCAGTCAGAGGCCCTGGGACCCTGCAGGACT CTTGACCCAGCTCTACCTGCCACTCCCCTGGAGCCTGGGGTCTGGGAAGGGGTCCACACC CAGTCGTGTGGTCAGGACCCGTCCCCTCTATTGCCCCAGACCTCAAGCAGTGCCTCCAGC AGCCCGCAGGCTGGAGAGTCCACGGGAGGGGCCAGGGAGGGAGAAAGGGAGGGGCTGGGG CCTGGGTCCGGCGCTGGCACCTTACTTCCTCATCTCCTTGGCCCGGCGCGTGGCGGCCTC CACCGCGCTCATGGCAGCCGCCCGCAGCCCGCCCTGCTCCAGCGCGTGCAGCCCGTAGAT GGTGGTACCGCCCGGCGTGCACACGTCGGTCCGCAGCTGAGCCGGGTGCTGCCCCTTCTG CAGAAGCATCTTGGCTGTCCCCAGCAGGGTCTGGGCAGCAATGCGGTATGCCAGGCCACT GGGCATGCCCATCTTGATGGCGCCTTCGGCCAAGGCCTCCGAGAAGGCACATACAAAGGC CACGCCGCTGCCGCTGAGGCCGGTGTGGGTGTCCACCTGGGCCTCGGGCACCTCCTCGCA CTGCCCGCAGGCCTCCAGCAGGGTCTGCAGGAGCTCGGCCTCGCTGTTCCCGGCGTGGCG GCCCCGCGCCAGCACCATGGCCCCCTCCTGGACCACGCAGGGCAGGTTCGGGGAGACCCG CAGCACTCGAGCGCCGGGAGGCAGCAGCTCCTCCATGGTGCTCAGGGGGACGCCGGCAGC CACGGATACCAGGATGTGCTCTGTGGTGACCACAGGCGCCACCTCCGCCAGGACGGCGGG CAGGACGTGGGGCTTGGTGGCGAAGATGACAAGGGAGCAGCTCTGCAGCACCTCGTGGTT GGAGTGGGTGGTCCGGCAGCCCAGGGCCCGGAAGTGGCAGAGGTTCCTGTCAGTGGGTGC GCTGGCCAGCACGTACTGGGCTTCCACTTTTCCTGCTCGGATGAGGCCTTGAGCGATCGC CTCCGCCATGCGGCCAGCGCCCACGAAGCCCACGCGCCGCGGGCCGGTCTCCGCCGCCGC CGCCATAACGCCGCGTCCAGGCGTCGGCCGGCCAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 749-922, gnl|bosTau2|chr14 (648577-648750) | |
| 749-922, gnl|Hg17|chr8 (144759023-144759196) | |
| 749-922, gnl|Mm7|chr15 (75999455-75999628) | |
| 1008-1229, gnl|bosTau2|chr14 (649288-649509) | |
| 1008-1229, gnl|Hg17|chr8 (144759773-144759994) | |
| 1008-1229, gnl|Mm7|chr15 (76000793-76001014) | |
| 1472-1574, gnl|bosTau2|chr14 (654880-654985) | |
| 1472-1574, gnl|canFam2|chr13 (40294669-40294739) | |
| 1472-1574, gnl|danRer3|chrUn (103213894-103213824) | |
| 1472-1574, gnl|echTel1|scaffold_281339 (48327-48269) | |
| 1472-1574, gnl|galGal2|chr2 (135101804-135101740) | |
| 1472-1574, gnl|hg17|chr8 (144762771-144762841) | |
| 1472-1574, gnl|Hg17|chr8 (144762770-144762881) | |
| 1472-1574, gnl|loxAfr1|scaffold_64239 (8391-8461) | |
| 1472-1574, gnl|mm7|chr15 (76003924-76003994) | |
| 1472-1574, gnl|Mm7|chr15 (76003923-76004016) | |
| 1472-1574, gnl|monDom2|scaffold_79 (4817480-4817410) | |
| 1472-1574, gnl|panTro1|chr7 (148030370-148030440) | |
| 1472-1574, gnl|rheMac2|chr8 (146241614-146241684) | |
| 1472-1574, gnl|rn3|chr7 (113935133-113935203) | |
| 1472-1574, gnl|xenTro1|scaffold_3438 (8936-8981) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 749-922, gnl|bosTau2|chr14 (648577-648750) | |
| 749-922, gnl|Hg17|chr8 (144759023-144759196) | |
| 749-922, gnl|Mm7|chr15 (75999455-75999628) | |
| 1008-1229, gnl|bosTau2|chr14 (649288-649509) | |
| 1008-1229, gnl|Hg17|chr8 (144759773-144759994) | |
| 1008-1229, gnl|Mm7|chr15 (76000793-76001014) | |
| 1472-1574, gnl|bosTau2|chr14 (654880-654985) | |
| 1472-1574, gnl|canFam2|chr13 (40294669-40294739) | |
| 1472-1574, gnl|danRer3|chrUn (103213894-103213824) | |
| 1472-1574, gnl|echTel1|scaffold_281339 (48327-48269) | |
| 1472-1574, gnl|galGal2|chr2 (135101804-135101740) | |
| 1472-1574, gnl|hg17|chr8 (144762771-144762841) | |
| 1472-1574, gnl|Hg17|chr8 (144762770-144762881) | |
| 1472-1574, gnl|loxAfr1|scaffold_64239 (8391-8461) | |
| 1472-1574, gnl|mm7|chr15 (76003924-76003994) | |
| 1472-1574, gnl|Mm7|chr15 (76003923-76004016) | |
| 1472-1574, gnl|monDom2|scaffold_79 (4817480-4817410) | |
| 1472-1574, gnl|panTro1|chr7 (148030370-148030440) | |
| 1472-1574, gnl|rheMac2|chr8 (146241614-146241684) | |
| 1472-1574, gnl|rn3|chr7 (113935133-113935203) | |
| 1472-1574, gnl|xenTro1|scaffold_3438 (8936-8981) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nep (0.183925) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |