Non-Coding RNA Search

Ss1.1-Ova1-OVRM10200A11.5

Sequence:


               
               AGGTGGCGGCGGCCCAAAGCGGAGGGAAAGAGGAAGACAGGGAGCACGAAAACCGGAGCC
GGAGTCGCTGCGTCGGAGACCCCTGTGCGGTGCGGAGGGGGCTACGGCCCCGGCTCTGAC
CCGCTCCGGGGCGGGTGGGCCATGGCGGAGATCAGCGATCTGGACCGGCAGATCGAGCAG
CTGCGGCGCTGCGAGCTCATCAAGGAGAGCGAAGTCAAGGCCCTGTGCGCAAAGGCCAGA
GAGATCTTGGTGGAGGAGAGCAACGTGCAGAGGGTGGACTCGCCAGTCACAGTATGCGGT
GACATCCATGGACAATTCTATGACCTCAAGGAGCTGTTCAGAGTGGGTGGCGATGTCCCT
GAGACTAACTACCTCTTCATGGGGGACTTCGTGGATCGTGGTTTCTACAGCGTCGAAACC
TTCCTCCTGCTGCTGGCACTGAAGGTTCGCTACCCTGACCGCATCACCCTGATCCGGGGC
AACCACGAGAGCCGTCAGATCACCCAGGTCTACGGCTTCTACGACGAGTGCCTGCGCAAG
TACGGCTCAGTGACCGTGTGGCGCTACTGCACTGAGATCTTTGACTACCTCAGCCTGTCG
GCCATCATCGATGGCAAGATCTTCTGTGTGCACGGGGGCCTCTCCCCCTCCATCCAGACC
CTGGACCAGATCCGGACAATCGACCGAAAGCAAGAGGTGCCTCACGACGGGCCCATGTGT
GACCTGCTCTGGTCCGACCCTGAAGACACAACAGGCTGGGGGGTGAGCCCCCGTGGGGCT
GGCTACCTGTTTGGCAGCGACGTGGTGGCCCAGTTCAACGCAGCCAACGACATTGACATG
ATCTGCCGCGCCCACCAACTGGTGATGGAAGGTTACAAGTGGCACTTCAATGAGACTGTA
CTCACTGTGTGGTCGGCACCCAACTACTGCTACCGCTGTGGGAACGTGGCCGCCATCCTG
GAGCTGGACGAGCATCTCCAGAAGGATTTCATCATCTTCGAGGCTGCTCCCCAAGAGACA
CGGGGCATCCCCTCCAAAAAGCCCGTGGCCGACTACTTCCTGTGACCCCTTCGGCCCCTG
CCCCCCTCCAGCCCCTCTGGCCCCCGGACCACTGTGACTCTGCCCTCTTCAGACGGAGGC
CGGGCATGGGGGGGTGCACTGTCCCCGGCTTTGCTCTCCCCCCGAAGAGGGCACTTCAGG
GGTGAGGACTTTTCTGGAGAGGCTCGGAGCCTCAGCTCCGTGCTCTTCCTCCCGTGTCCC
CGCTTGAACCATGAAGTTTCCAATAATTTTGTTTTTCTTTTTTCCTTTTTTTTTGTTTTT
TTTTGTTTTTAGATAAAAATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGCGGCGGCCCAAAGCGGAGGGAAAGAGGAAGACAGGGAGCACGAAAACCGGAGCC
GGAGTCGCTGCGTCGGAGACCCCTGTGCGGTGCGGAGGGGGCTACGGCCCCGGCTCTGAC
CCGCTCCGGGGCGGGTGGGCCATGGCGGAGATCAGCGATCTGGACCGGCAGATCGAGCAG
CTGCGGCGCTGCGAGCTCATCAAGGAGAGCGAAGTCAAGGCCCTGTGCGCAAAGGCCAGA
GAGATCTTGGTGGAGGAGAGCAACGTGCAGAGGGTGGACTCGCCAGTCACAGTATGCGGT
GACATCCATGGACAATTCTATGACCTCAAGGAGCTGTTCAGAGTGGGTGGCGATGTCCCT
GAGACTAACTACCTCTTCATGGGGGACTTCGTGGATCGTGGTTTCTACAGCGTCGAAACC
TTCCTCCTGCTGCTGGCACTGAAGGTTCGCTACCCTGACCGCATCACCCTGATCCGGGGC
AACCACGAGAGCCGTCAGATCACCCAGGTCTACGGCTTCTACGACGAGTGCCTGCGCAAG
TACGGCTCAGTGACCGTGTGGCGCTACTGCACTGAGATCTTTGACTACCTCAGCCTGTCG
GCCATCATCGATGGCAAGATCTTCTGTGTGCACGGGGGCCTCTCCCCCTCCATCCAGACC
CTGGACCAGATCCGGACAATCGACCGAAAGCAAGAGGTGCCTCACGACGGGCCCATGTGT
GACCTGCTCTGGTCCGACCCTGAAGACACAACAGGCTGGGGGGTGAGCCCCCGTGGGGCT
GGCTACCTGTTTGGCAGCGACGTGGTGGCCCAGTTCAACGCAGCCAACGACATTGACATG
ATCTGCCGCGCCCACCAACTGGTGATGGAAGGTTACAAGTGGCACTTCAATGAGACTGTA
CTCACTGTGTGGTCGGCACCCAACTACTGCTACCGCTGTGGGAACGTGGCCGCCATCCTG
GAGCTGGACGAGCATCTCCAGAAGGATTTCATCATCTTCGAGGCTGCTCCCCAAGAGACA
CGGGGCATCCCCTCCAAAAAGCCCGTGGCCGACTACTTCCTGTGACCCCTTCGGCCCCTG
CCCCCCTCCAGCCCCTCTGGCCCCCGGACCACTGTGACTCTGCCCTCTTCAGACGGAGGC
CGGGCATGGGGGGGTGCACTGTCCCCGGCTTTGCTCTCCCCCCGAAGAGGGCACTTCAGG
GGTGAGGACTTTTCTGGAGAGGCTCGGAGCCTCAGCTCCGTGCTCTTCCTCCCGTGTCCC
CGCTTGAACCATGAAGTTTCCAATAATTTTGTTTTTCTTTTTTCCTTTTTTTTTGTTTTT
TTTTGTTTTTAGATAAAAATTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R6K8_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R6K8_PONPY

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               157-971, gnl|bosTau2|chr18 (45975562-45974747)
               

               
               157-971, gnl|Hg17|chr16 (31724694-31725433)
               

               
               157-971, gnl|Mm7|chr8 (32378519-32384996)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-971, gnl|bosTau2|chr18 (45975562-45974747)
               

               
               157-971, gnl|Hg17|chr16 (31724694-31725433)
               

               
               157-971, gnl|Mm7|chr8 (32378519-32384996)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               clu (0.358938)
               

               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               cli (0.152812)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               cli (0.152812)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	157-971, gnl\|bosTau2\|chr18 (45975562-45974747)
	157-971, gnl\|Hg17\|chr16 (31724694-31725433)
	157-971, gnl\|Mm7\|chr8 (32378519-32384996)

	clu (0.358938)
	ill (0.351185)
	fce (0.271592)
	ece (0.229305)
	cty (0.20816)
	jej (0.197844)
	cli (0.152812)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)