Non-Coding RNA Search

Ss1.1-Ova1-OVRM10200G10.5

Sequence:


               
               AGATCGAACTTTGACCGCTCCTGAGCGGCCGGCGCCTGCGGGTAGCACGCATGCGTCTTT
TGTTTGAATGGGTGGCGCCCTTATCCTCGCCGCGGCGGGGGCAGCCCTGGCCGTGCTGCT
GGCAGTGCGGCTGTGGGTAGTCCTGCGTCCCCGCGCCGCTGTGCCTCGGCGGTCTCTCAG
CCTCTTGGTGGTCGCTGGGTCTGGTGGGCACACCACTGAGATCCTGAGGCTGCTCGAGAC
CTTATCTGATGCTTACTCTCCGAGACATTATGTCATTGCCGACACTGATGAAATGAGTGC
CCATAAAATAAATTCTTTTGAACTCAATCGAGCTGATCGGAACCCCAGTACTACGTTTCC
CGAGTACCACATCCACCGCATCCCCAGGAGCCGGGAGGTTCAGCAGTCCTGGCCGTCCTC
GGCGCTCAGCACCCTCTACTCCCTGTGGTTCTCCTTCCCCCTGACTCACCGAGTGAAGCC
AGATTTGGTGTTGTGTAACGGGCCAGGAACATGTGTTCCTATCTGTATATCTGCCCTTCT
CCTCGGGATACTAGGAATAAAGAAAGTGATCATTGTCTACGTGGAAAGCATCTGCCGAGT
GGAGCATTTATCCCTCTCCGGAAAGATTCTGTTCCACCTCTCCGATTACTTCATTGTCCA
GTGGCCGGCCCTAGGTTTTGAAAATCCTGAGAAGAGTGGCCAAGAGTTAAAAACTCGGGT
GAATAATCCCGTGAGGGAACTGAGCTGGTTCTTGTAAAACAAACATGAATAAACCGCTTG
AGTATGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCGAACTTTGACCGCTCCTGAGCGGCCGGCGCCTGCGGGTAGCACGCATGCGTCTTT
TGTTTGAATGGGTGGCGCCCTTATCCTCGCCGCGGCGGGGGCAGCCCTGGCCGTGCTGCT
GGCAGTGCGGCTGTGGGTAGTCCTGCGTCCCCGCGCCGCTGTGCCTCGGCGGTCTCTCAG
CCTCTTGGTGGTCGCTGGGTCTGGTGGGCACACCACTGAGATCCTGAGGCTGCTCGAGAC
CTTATCTGATGCTTACTCTCCGAGACATTATGTCATTGCCGACACTGATGAAATGAGTGC
CCATAAAATAAATTCTTTTGAACTCAATCGAGCTGATCGGAACCCCAGTACTACGTTTCC
CGAGTACCACATCCACCGCATCCCCAGGAGCCGGGAGGTTCAGCAGTCCTGGCCGTCCTC
GGCGCTCAGCACCCTCTACTCCCTGTGGTTCTCCTTCCCCCTGACTCACCGAGTGAAGCC
AGATTTGGTGTTGTGTAACGGGCCAGGAACATGTGTTCCTATCTGTATATCTGCCCTTCT
CCTCGGGATACTAGGAATAAAGAAAGTGATCATTGTCTACGTGGAAAGCATCTGCCGAGT
GGAGCATTTATCCCTCTCCGGAAAGATTCTGTTCCACCTCTCCGATTACTTCATTGTCCA
GTGGCCGGCCCTAGGTTTTGAAAATCCTGAGAAGAGTGGCCAAGAGTTAAAAACTCGGGT
GAATAATCCCGTGAGGGAACTGAGCTGGTTCTTGTAAAACAAACATGAATAAACCGCTTG
AGTATGCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21450685|ref|NP_659425.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21450685|ref|NP_659425.1|

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               6-213, gnl|bosTau2|chr3 (38505207-38505001)
               

               
               6-213, gnl|dasNov1|scaffold_124622 (1200-1975)
               

               
               6-213, gnl|echTel1|scaffold_277454 (40482-41352)
               

               
               6-213, gnl|hg17|chr1 (95249886-95250609)
               

               
               6-213, gnl|Hg17|chr1 (95250529-95250330)
               

               
               6-213, gnl|loxAfr1|scaffold_16857 (16308-15420)
               

               
               6-213, gnl|mm7|chr3 (121063997-121063290)
               

               
               6-213, gnl|Mm7|chr3 (121063365-121063558)
               

               
               6-213, gnl|panTro1|chr1 (94243601-94244324)
               

               
               6-213, gnl|rheMac2|chr1 (98103340-98104069)
               

               
               6-213, gnl|rn3|chr2 (217839126-217838419)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-213, gnl|bosTau2|chr3 (38505207-38505001)
               

               
               6-213, gnl|dasNov1|scaffold_124622 (1200-1975)
               

               
               6-213, gnl|echTel1|scaffold_277454 (40482-41352)
               

               
               6-213, gnl|hg17|chr1 (95249886-95250609)
               

               
               6-213, gnl|Hg17|chr1 (95250529-95250330)
               

               
               6-213, gnl|loxAfr1|scaffold_16857 (16308-15420)
               

               
               6-213, gnl|mm7|chr3 (121063997-121063290)
               

               
               6-213, gnl|Mm7|chr3 (121063365-121063558)
               

               
               6-213, gnl|panTro1|chr1 (94243601-94244324)
               

               
               6-213, gnl|rheMac2|chr1 (98103340-98104069)
               

               
               6-213, gnl|rn3|chr2 (217839126-217838419)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               duo (0.172801)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               duo (0.172801)

	6-213, gnl\|bosTau2\|chr3 (38505207-38505001)
	6-213, gnl\|dasNov1\|scaffold_124622 (1200-1975)
	6-213, gnl\|echTel1\|scaffold_277454 (40482-41352)
	6-213, gnl\|hg17\|chr1 (95249886-95250609)
	6-213, gnl\|Hg17\|chr1 (95250529-95250330)
	6-213, gnl\|loxAfr1\|scaffold_16857 (16308-15420)
	6-213, gnl\|mm7\|chr3 (121063997-121063290)
	6-213, gnl\|Mm7\|chr3 (121063365-121063558)
	6-213, gnl\|panTro1\|chr1 (94243601-94244324)
	6-213, gnl\|rheMac2\|chr1 (98103340-98104069)
	6-213, gnl\|rn3\|chr2 (217839126-217838419)

	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	duo (0.172801)