Non-Coding RNA Search

Ss1.1-Ova1-OVRM10200G12.5

Sequence:


               
               GCGGCGGTGGCGGCGGCGCCCGAGCCTCGCTCTGAGAGACAGAATGGACAGCAAATTATG
GATGAACCTATGGGAGAGGAGGAGATTAATCCACAAACTGAAGAAGGCAGTATCAAAGAA
ATTGCAATCACACATCATGTAAAGGAAGGACATGAAAAGGCGGATCCTTCCCAATTTGAA
CTTTTAAAAGTATTAGGGCAGGGATCATTTGGAAAGGTTTTCTTAGTCAAAAAAATCTCA
GGCTCTGATGCTAGACAGCTTTATGCCATGAAAGTATTGAAGAAGGCCACATTGAAAGTT
CGAGACCGTGTTCGGACAAAAATGGAGCGTGATATCTTGGTAGAAGTTAATCATCCTTTT
ATTGTCAAGTTACATTATGCTTTTCAAACCGAAGGGAAGTTGTATCTCATATTGGACTTT
CTCAGGGGAGGAGATTTGTTTACACGCTTATCCAAAGAGGTGATGTTCACAGAAGAAGAT
GTCAAATTCTACTTGGCTGAACTTGCGTTGGCTCTAGACCATCTGCATAGCCTGGGAATA
ATCTATAGAGACTTAAAACCAGAAAACATCCTTCTTGATGAAGAAGGTCATATCAAGTTA
ACAGATTTTGGCCTAAGTAAAGAGTCTATTGACCATGAAAAGAAAGCATATTCTTTTTGT
GGAACTGTGGAATACATGGCACCAGAAGTAGTTAATCGTCGAGGTCACACTCAGAGTGCA
ACTGGTGGTCTTTTGGTGTGTTAATGTTTGAGATGCTTACTGGTACACTACCTTTCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGGTGGCGGCGGCGCCCGAGCCTCGCTCTGAGAGACAGAATGGACAGCAAATTATG
GATGAACCTATGGGAGAGGAGGAGATTAATCCACAAACTGAAGAAGGCAGTATCAAAGAA
ATTGCAATCACACATCATGTAAAGGAAGGACATGAAAAGGCGGATCCTTCCCAATTTGAA
CTTTTAAAAGTATTAGGGCAGGGATCATTTGGAAAGGTTTTCTTAGTCAAAAAAATCTCA
GGCTCTGATGCTAGACAGCTTTATGCCATGAAAGTATTGAAGAAGGCCACATTGAAAGTT
CGAGACCGTGTTCGGACAAAAATGGAGCGTGATATCTTGGTAGAAGTTAATCATCCTTTT
ATTGTCAAGTTACATTATGCTTTTCAAACCGAAGGGAAGTTGTATCTCATATTGGACTTT
CTCAGGGGAGGAGATTTGTTTACACGCTTATCCAAAGAGGTGATGTTCACAGAAGAAGAT
GTCAAATTCTACTTGGCTGAACTTGCGTTGGCTCTAGACCATCTGCATAGCCTGGGAATA
ATCTATAGAGACTTAAAACCAGAAAACATCCTTCTTGATGAAGAAGGTCATATCAAGTTA
ACAGATTTTGGCCTAAGTAAAGAGTCTATTGACCATGAAAAGAAAGCATATTCTTTTTGT
GGAACTGTGGAATACATGGCACCAGAAGTAGTTAATCGTCGAGGTCACACTCAGAGTGCA
ACTGGTGGTCTTTTGGTGTGTTAATGTTTGAGATGCTTACTGGTACACTACCTTTCCAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               629-746, + strand, RNAz p=0.508448

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               629-746, + strand, RNAz p=0.508448

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               598-695, + strand, RNAmicro p=0.99106

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               598-695, + strand, RNAmicro p=0.99106

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               100-218, gnl|bosTau2|chrX (38433399-38433517)
               

               
               100-218, gnl|canFam2|chrX (16062858-16063024)
               

               
               100-218, gnl|danRer3|chr5 (15085062-15084919)
               

               
               100-218, gnl|dasNov1|scaffold_12931 (1211-1080)
               

               
               100-218, gnl|echTel1|scaffold_221604 (1181-1030)
               

               
               100-218, gnl|fr1|chrUn (281172060-281172198)
               

               
               100-218, gnl|galGal2|chr1 (113135210-113135066)
               

               
               100-218, gnl|hg17|chrX (19987042-19987203)
               

               
               100-218, gnl|Hg17|chrX (19987179-19987061)
               

               
               100-218, gnl|loxAfr1|scaffold_2861 (52752-52593)
               

               
               100-218, gnl|mm7|chrX (154085965-154085806)
               

               
               100-218, gnl|Mm7|chrX (154085826-154085944)
               

               
               100-218, gnl|monDom2|scaffold_48 (13392620-13392469)
               

               
               100-218, gnl|oryCun1|scaffold_211781 (168250-168126)
               

               
               100-218, gnl|panTro1|chrX (20721499-20721660)
               

               
               100-218, gnl|rheMac2|chrX (17958273-17958434)
               

               
               100-218, gnl|rn3|chrX (56824481-56824642)
               

               
               100-218, gnl|tetNig1|chr1 (4077812-4077689)
               

               
               100-218, gnl|xenTro1|scaffold_461 (147621-147745)
               


               
               575-746, gnl|bosTau2|chrX (39119271-39119441)
               

               
               575-746, gnl|Hg17|chrX (19965767-19965603)
               

               
               575-746, gnl|Mm7|chrX (154105121-154105291)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-218, gnl|bosTau2|chrX (38433399-38433517)
               

               
               100-218, gnl|canFam2|chrX (16062858-16063024)
               

               
               100-218, gnl|danRer3|chr5 (15085062-15084919)
               

               
               100-218, gnl|dasNov1|scaffold_12931 (1211-1080)
               

               
               100-218, gnl|echTel1|scaffold_221604 (1181-1030)
               

               
               100-218, gnl|fr1|chrUn (281172060-281172198)
               

               
               100-218, gnl|galGal2|chr1 (113135210-113135066)
               

               
               100-218, gnl|hg17|chrX (19987042-19987203)
               

               
               100-218, gnl|Hg17|chrX (19987179-19987061)
               

               
               100-218, gnl|loxAfr1|scaffold_2861 (52752-52593)
               

               
               100-218, gnl|mm7|chrX (154085965-154085806)
               

               
               100-218, gnl|Mm7|chrX (154085826-154085944)
               

               
               100-218, gnl|monDom2|scaffold_48 (13392620-13392469)
               

               
               100-218, gnl|oryCun1|scaffold_211781 (168250-168126)
               

               
               100-218, gnl|panTro1|chrX (20721499-20721660)
               

               
               100-218, gnl|rheMac2|chrX (17958273-17958434)
               

               
               100-218, gnl|rn3|chrX (56824481-56824642)
               

               
               100-218, gnl|tetNig1|chr1 (4077812-4077689)
               

               
               100-218, gnl|xenTro1|scaffold_461 (147621-147745)
               


               
               575-746, gnl|bosTau2|chrX (39119271-39119441)
               

               
               575-746, gnl|Hg17|chrX (19965767-19965603)
               

               
               575-746, gnl|Mm7|chrX (154105121-154105291)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	100-218, gnl\|bosTau2\|chrX (38433399-38433517)
	100-218, gnl\|canFam2\|chrX (16062858-16063024)
	100-218, gnl\|danRer3\|chr5 (15085062-15084919)
	100-218, gnl\|dasNov1\|scaffold_12931 (1211-1080)
	100-218, gnl\|echTel1\|scaffold_221604 (1181-1030)
	100-218, gnl\|fr1\|chrUn (281172060-281172198)
	100-218, gnl\|galGal2\|chr1 (113135210-113135066)
	100-218, gnl\|hg17\|chrX (19987042-19987203)
	100-218, gnl\|Hg17\|chrX (19987179-19987061)
	100-218, gnl\|loxAfr1\|scaffold_2861 (52752-52593)
	100-218, gnl\|mm7\|chrX (154085965-154085806)
	100-218, gnl\|Mm7\|chrX (154085826-154085944)
	100-218, gnl\|monDom2\|scaffold_48 (13392620-13392469)
	100-218, gnl\|oryCun1\|scaffold_211781 (168250-168126)
	100-218, gnl\|panTro1\|chrX (20721499-20721660)
	100-218, gnl\|rheMac2\|chrX (17958273-17958434)
	100-218, gnl\|rn3\|chrX (56824481-56824642)
	100-218, gnl\|tetNig1\|chr1 (4077812-4077689)
	100-218, gnl\|xenTro1\|scaffold_461 (147621-147745)

	575-746, gnl\|bosTau2\|chrX (39119271-39119441)
	575-746, gnl\|Hg17\|chrX (19965767-19965603)
	575-746, gnl\|Mm7\|chrX (154105121-154105291)