Ss1.1-Ova1-OVRM10202A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCGAGCGAGTTTCTCAGCGCCGTTTTCGCGGGAAGGGCCCGGGGCCTCCCATTTCGAGT CGCGGGAGCTGCGGGTCTTACCGGGAGAGACGCTGCACGTGGAGCCCGCGCCGCTGCCGT TCTCAGCCGGCTCTGGAGTGCGGGCGGGGGCGACGGGGCTGAATCCGGAGCGGGGCTGAG CTTTTGAAATACTTCACAACAATGACGAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAG ATCGATGGAACAGAGAAACCAGAGTGCACAGAAGAAAGCATTGTAGAACAAACCTATACC CCGGCTGAATGCATAAGCCAAGCCATAGACATCAATGAACCAATAGGCAATTTGAAGAAA CTACTAGAACCAAGACTACAGTGTTCTTTGGATGCTCATGAAATTTGCCTGCAAGATATT CAGCTGGATCCAGAACGAAGTTTATTTGACCAGGGAGTAAAGACAGATGGAACTGTACAG CTTAGTGTACAGGTAATTTCTTACCAAGGTAAGATACTTTCAGTGTTGTTATTTAAAAGT TTAGCTCATGTTTTTAATATAGGAACTTTTATAAGCCCAGATGCCCACCATGCTGAAGCA GAAGCACATCTTGTTGAGGAAGCTCAAGTGATAACTCTTGATGGCACAAAACACATTACA ACTATTTCAGATGAAACCTCAGAACTAGTGACACGATGGGCTGCTGCACTTGAGGGTTAT AGGAAAGAGCAAGAACGTCTTGGGATACCCTATGATCCCATACAGTGGTCCACAGACCAG GTCCTGCACTGGGTGGTTTGGGTAATGAAGGAATTCAGCATGACCGACATAGACCTCACT ACACTGAATATTTCCGGAAGAGAACTGTGTAGTCTCAACCAAGAAGACTTTTTTCAGCGG GTTCCTCGGGGAGAGATTCTCTGGAGTCATCTGGAACTTCTTCGAAAATATGTATTGGCC AGCCAAGAACAACAGATGAATGAGATAGTTACAATTGATCAACCTGTGCAGATTATTCCA GCATCAGTTCAGTCTGCTACACCAACTGCGATTAAAGCTATAAGTAGTAGTGCAAAGGCA GCTAAAGTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCGAGCGAGTTTCTCAGCGCCGTTTTCGCGGGAAGGGCCCGGGGCCTCCCATTTCGAGT CGCGGGAGCTGCGGGTCTTACCGGGAGAGACGCTGCACGTGGAGCCCGCGCCGCTGCCGT TCTCAGCCGGCTCTGGAGTGCGGGCGGGGGCGACGGGGCTGAATCCGGAGCGGGGCTGAG CTTTTGAAATACTTCACAACAATGACGAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAG ATCGATGGAACAGAGAAACCAGAGTGCACAGAAGAAAGCATTGTAGAACAAACCTATACC CCGGCTGAATGCATAAGCCAAGCCATAGACATCAATGAACCAATAGGCAATTTGAAGAAA CTACTAGAACCAAGACTACAGTGTTCTTTGGATGCTCATGAAATTTGCCTGCAAGATATT CAGCTGGATCCAGAACGAAGTTTATTTGACCAGGGAGTAAAGACAGATGGAACTGTACAG CTTAGTGTACAGGTAATTTCTTACCAAGGTAAGATACTTTCAGTGTTGTTATTTAAAAGT TTAGCTCATGTTTTTAATATAGGAACTTTTATAAGCCCAGATGCCCACCATGCTGAAGCA GAAGCACATCTTGTTGAGGAAGCTCAAGTGATAACTCTTGATGGCACAAAACACATTACA ACTATTTCAGATGAAACCTCAGAACTAGTGACACGATGGGCTGCTGCACTTGAGGGTTAT AGGAAAGAGCAAGAACGTCTTGGGATACCCTATGATCCCATACAGTGGTCCACAGACCAG GTCCTGCACTGGGTGGTTTGGGTAATGAAGGAATTCAGCATGACCGACATAGACCTCACT ACACTGAATATTTCCGGAAGAGAACTGTGTAGTCTCAACCAAGAAGACTTTTTTCAGCGG GTTCCTCGGGGAGAGATTCTCTGGAGTCATCTGGAACTTCTTCGAAAATATGTATTGGCC AGCCAAGAACAACAGATGAATGAGATAGTTACAATTGATCAACCTGTGCAGATTATTCCA GCATCAGTTCAGTCTGCTACACCAACTGCGATTAAAGCTATAAGTAGTAGTGCAAAGGCA GCTAAAGTACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 425-515, + strand, RNAz p=0.603675 | |
| 455-567, + strand, RNAz p=0.830281 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 425-515, + strand, RNAz p=0.603675 | |
| 455-567, + strand, RNAz p=0.830281 |
| Aligned organism(s): 105 entry(ies) | More info |
| Aligned organism(s): 105 entry(ies) | Help | Less info |
| 9-174, gnl|bosTau2|chr1 (8000389-8000555) | |
| 9-174, gnl|Hg17|chr21 (26029595-26029761) | |
| 9-174, gnl|Mm7|chr16 (84833965-84834132) | |
| 277-423, gnl|bosTau2|chr1 (8012900-8013046) | |
| 277-423, gnl|canFam2|chr31 (24243754-24243904) | |
| 277-423, gnl|canFam2|chr31 (24243754-24243865) | |
| 277-423, gnl|danRer3|chrNA (43259695-43259844) | |
| 277-423, gnl|danRer3|chrNA (43259697-43259806) | |
| 277-423, gnl|dasNov1|scaffold_21178 (42714-42581) | |
| 277-423, gnl|dasNov1|scaffold_21178 (42714-42608) | |
| 277-423, gnl|fr1|chrUn (284706747-284706894) | |
| 277-423, gnl|galGal2|chr1 (96326761-96326911) | |
| 277-423, gnl|galGal2|chr1 (96326761-96326872) | |
| 277-423, gnl|hg17|chr21 (26039391-26039541) | |
| 277-423, gnl|Hg17|chr21 (26039390-26039536) | |
| 277-423, gnl|hg17|chr7 (62797887-62797998) | |
| 277-423, gnl|loxAfr1|scaffold_164167 (840-688) | |
| 277-423, gnl|loxAfr1|scaffold_164167 (838-728) | |
| 277-423, gnl|mm7|chr16 (84839916-84840066) | |
| 277-423, gnl|mm7|chr16 (84839916-84840027) | |
| 277-423, gnl|Mm7|chr16 (84839915-84840061) | |
| 277-423, gnl|monDom2|scaffold_29 (7524220-7524070) | |
| 277-423, gnl|monDom2|scaffold_29 (7524220-7524109) | |
| 277-423, gnl|oryCun1|scaffold_215112 (8506-8356) | |
| 277-423, gnl|oryCun1|scaffold_215112 (8506-8395) | |
| 277-423, gnl|panTro1|chr22 (26015710-26015860) | |
| 277-423, gnl|panTro1|chr6 (64309743-64309854) | |
| 277-423, gnl|rheMac2|chr3 (20925034-20924884) | |
| 277-423, gnl|rheMac2|chr3 (20925034-20924923) | |
| 277-423, gnl|rn3|chr11 (24329953-24330103) | |
| 277-423, gnl|rn3|chr11 (24329953-24330064) | |
| 277-423, gnl|tetNig1|chr2 (9363143-9362994) | |
| 277-423, gnl|tetNig1|chr2 (9363141-9363032) | |
| 277-423, gnl|xenTro1|scaffold_114 (856796-856949) | |
| 277-423, gnl|xenTro1|scaffold_114 (856796-856907) | |
| 425-567, gnl|bosTau2|chr1 (8017225-8017369) | |
| 425-567, gnl|canFam2|chr31 (24247414-24247527) | |
| 425-567, gnl|danRer3|chrNA (43259940-43260014) | |
| 425-567, gnl|dasNov1|scaffold_9624 (117256-117142) | |
| 425-567, gnl|echTel1|scaffold_284087 (6022-6136) | |
| 425-567, gnl|fr1|chrUn (284707002-284707103) | |
| 425-567, gnl|galGal2|chr1 (96327406-96327520) | |
| 425-567, gnl|hg17|chr21 (26043194-26043308) | |
| 425-567, gnl|Hg17|chr21 (26043219-26043364) | |
| 425-567, gnl|loxAfr1|scaffold_16960 (25576-25462) | |
| 425-567, gnl|mm7|chr16 (84842851-84842960) | |
| 425-567, gnl|Mm7|chr16 (84842871-84843020) | |
| 425-567, gnl|monDom2|scaffold_29 (7507479-7507364) | |
| 425-567, gnl|oryCun1|scaffold_215112 (4499-4390) | |
| 425-567, gnl|panTro1|chr22 (26019635-26019749) | |
| 425-567, gnl|rheMac2|chr3 (20920702-20920588) | |
| 425-567, gnl|rn3|chr11 (24332772-24332881) | |
| 425-567, gnl|xenTro1|scaffold_114 (857404-857513) | |
| 577-754, gnl|bosTau2|chr1 (8019516-8019693) | |
| 577-754, gnl|canFam2|chr31 (24249480-24249766) | |
| 577-754, gnl|canFam2|chr31 (24249510-24249756) | |
| 577-754, gnl|danRer3|chrNA (43261620-43261855) | |
| 577-754, gnl|danRer3|chrNA (43261625-43261850) | |
| 577-754, gnl|dasNov1|scaffold_21178 (42487-42256) | |
| 577-754, gnl|dasNov1|scaffold_9624 (115605-115316) | |
| 577-754, gnl|echTel1|scaffold_284087 (8509-8798) | |
| 577-754, gnl|echTel1|scaffold_284087 (8542-8788) | |
| 577-754, gnl|fr1|chrUn (284707165-284707426) | |
| 577-754, gnl|fr1|chrUn (284707192-284707417) | |
| 577-754, gnl|galGal2|chr1 (96331745-96332014) | |
| 577-754, gnl|galGal2|chr1 (96331758-96332004) | |
| 577-754, gnl|hg17|chr21 (26046138-26046426) | |
| 577-754, gnl|Hg17|chr21 (26046239-26046416) | |
| 577-754, gnl|hg17|chr7 (62798117-62798363) | |
| 577-754, gnl|loxAfr1|scaffold_16960 (22217-21928) | |
| 577-754, gnl|loxAfr1|scaffold_16960 (22184-21938) | |
| 577-754, gnl|mm7|chr16 (84844679-84844966) | |
| 577-754, gnl|mm7|chr16 (84844711-84844957) | |
| 577-754, gnl|Mm7|chr16 (84844780-84844957) | |
| 577-754, gnl|monDom2|scaffold_29 (7503016-7502723) | |
| 577-754, gnl|monDom2|scaffold_29 (7502986-7502740) | |
| 577-754, gnl|oryCun1|scaffold_87246 (783-501) | |
| 577-754, gnl|oryCun1|scaffold_87246 (757-511) | |
| 577-754, gnl|panTro1|chr22 (26022586-26022874) | |
| 577-754, gnl|panTro1|chr6 (64309973-64310219) | |
| 577-754, gnl|rheMac2|chr3 (20917848-20917561) | |
| 577-754, gnl|rheMac2|chr3 (20917817-20917571) | |
| 577-754, gnl|rn3|chr11 (24334644-24334931) | |
| 577-754, gnl|rn3|chr11 (24334676-24334922) | |
| 577-754, gnl|tetNig1|chr2 (9362731-9362496) | |
| 577-754, gnl|tetNig1|chr2 (9362726-9362501) | |
| 577-754, gnl|xenTro1|scaffold_114 (857978-858269) | |
| 577-754, gnl|xenTro1|scaffold_114 (858014-858260) | |
| 815-954, gnl|bosTau2|chr1 (8021494-8021633) | |
| 815-954, gnl|canFam2|chr31 (24256664-24256749) | |
| 815-954, gnl|danRer3|chrNA (43263873-43263958) | |
| 815-954, gnl|dasNov1|scaffold_128916 (2248-2333) | |
| 815-954, gnl|echTel1|scaffold_286384 (130039-130124) | |
| 815-954, gnl|fr1|chrUn (284707615-284707700) | |
| 815-954, gnl|galGal2|chr1 (96338885-96338970) | |
| 815-954, gnl|hg17|chr21 (26052304-26052389) | |
| 815-954, gnl|loxAfr1|scaffold_16960 (17125-17040) | |
| 815-954, gnl|mm7|chr16 (84851160-84851245) | |
| 815-954, gnl|monDom2|scaffold_29 (7487698-7487613) | |
| 815-954, gnl|oryCun1|scaffold_41512 (960-875) | |
| 815-954, gnl|panTro1|chr22 (26028765-26028850) | |
| 815-954, gnl|rheMac2|chr3 (20911610-20911525) | |
| 815-954, gnl|rn3|chr11 (24341224-24341309) | |
| 815-954, gnl|tetNig1|chr2 (9362303-9362218) | |
| 815-954, gnl|xenTro1|scaffold_114 (859658-859743) |
| Aligned organism(s): 105 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-174, gnl|bosTau2|chr1 (8000389-8000555) | |
| 9-174, gnl|Hg17|chr21 (26029595-26029761) | |
| 9-174, gnl|Mm7|chr16 (84833965-84834132) | |
| 277-423, gnl|bosTau2|chr1 (8012900-8013046) | |
| 277-423, gnl|canFam2|chr31 (24243754-24243904) | |
| 277-423, gnl|canFam2|chr31 (24243754-24243865) | |
| 277-423, gnl|danRer3|chrNA (43259695-43259844) | |
| 277-423, gnl|danRer3|chrNA (43259697-43259806) | |
| 277-423, gnl|dasNov1|scaffold_21178 (42714-42581) | |
| 277-423, gnl|dasNov1|scaffold_21178 (42714-42608) | |
| 277-423, gnl|fr1|chrUn (284706747-284706894) | |
| 277-423, gnl|galGal2|chr1 (96326761-96326911) | |
| 277-423, gnl|galGal2|chr1 (96326761-96326872) | |
| 277-423, gnl|hg17|chr21 (26039391-26039541) | |
| 277-423, gnl|Hg17|chr21 (26039390-26039536) | |
| 277-423, gnl|hg17|chr7 (62797887-62797998) | |
| 277-423, gnl|loxAfr1|scaffold_164167 (840-688) | |
| 277-423, gnl|loxAfr1|scaffold_164167 (838-728) | |
| 277-423, gnl|mm7|chr16 (84839916-84840066) | |
| 277-423, gnl|mm7|chr16 (84839916-84840027) | |
| 277-423, gnl|Mm7|chr16 (84839915-84840061) | |
| 277-423, gnl|monDom2|scaffold_29 (7524220-7524070) | |
| 277-423, gnl|monDom2|scaffold_29 (7524220-7524109) | |
| 277-423, gnl|oryCun1|scaffold_215112 (8506-8356) | |
| 277-423, gnl|oryCun1|scaffold_215112 (8506-8395) | |
| 277-423, gnl|panTro1|chr22 (26015710-26015860) | |
| 277-423, gnl|panTro1|chr6 (64309743-64309854) | |
| 277-423, gnl|rheMac2|chr3 (20925034-20924884) | |
| 277-423, gnl|rheMac2|chr3 (20925034-20924923) | |
| 277-423, gnl|rn3|chr11 (24329953-24330103) | |
| 277-423, gnl|rn3|chr11 (24329953-24330064) | |
| 277-423, gnl|tetNig1|chr2 (9363143-9362994) | |
| 277-423, gnl|tetNig1|chr2 (9363141-9363032) | |
| 277-423, gnl|xenTro1|scaffold_114 (856796-856949) | |
| 277-423, gnl|xenTro1|scaffold_114 (856796-856907) | |
| 425-567, gnl|bosTau2|chr1 (8017225-8017369) | |
| 425-567, gnl|canFam2|chr31 (24247414-24247527) | |
| 425-567, gnl|danRer3|chrNA (43259940-43260014) | |
| 425-567, gnl|dasNov1|scaffold_9624 (117256-117142) | |
| 425-567, gnl|echTel1|scaffold_284087 (6022-6136) | |
| 425-567, gnl|fr1|chrUn (284707002-284707103) | |
| 425-567, gnl|galGal2|chr1 (96327406-96327520) | |
| 425-567, gnl|hg17|chr21 (26043194-26043308) | |
| 425-567, gnl|Hg17|chr21 (26043219-26043364) | |
| 425-567, gnl|loxAfr1|scaffold_16960 (25576-25462) | |
| 425-567, gnl|mm7|chr16 (84842851-84842960) | |
| 425-567, gnl|Mm7|chr16 (84842871-84843020) | |
| 425-567, gnl|monDom2|scaffold_29 (7507479-7507364) | |
| 425-567, gnl|oryCun1|scaffold_215112 (4499-4390) | |
| 425-567, gnl|panTro1|chr22 (26019635-26019749) | |
| 425-567, gnl|rheMac2|chr3 (20920702-20920588) | |
| 425-567, gnl|rn3|chr11 (24332772-24332881) | |
| 425-567, gnl|xenTro1|scaffold_114 (857404-857513) | |
| 577-754, gnl|bosTau2|chr1 (8019516-8019693) | |
| 577-754, gnl|canFam2|chr31 (24249480-24249766) | |
| 577-754, gnl|canFam2|chr31 (24249510-24249756) | |
| 577-754, gnl|danRer3|chrNA (43261620-43261855) | |
| 577-754, gnl|danRer3|chrNA (43261625-43261850) | |
| 577-754, gnl|dasNov1|scaffold_21178 (42487-42256) | |
| 577-754, gnl|dasNov1|scaffold_9624 (115605-115316) | |
| 577-754, gnl|echTel1|scaffold_284087 (8509-8798) | |
| 577-754, gnl|echTel1|scaffold_284087 (8542-8788) | |
| 577-754, gnl|fr1|chrUn (284707165-284707426) | |
| 577-754, gnl|fr1|chrUn (284707192-284707417) | |
| 577-754, gnl|galGal2|chr1 (96331745-96332014) | |
| 577-754, gnl|galGal2|chr1 (96331758-96332004) | |
| 577-754, gnl|hg17|chr21 (26046138-26046426) | |
| 577-754, gnl|Hg17|chr21 (26046239-26046416) | |
| 577-754, gnl|hg17|chr7 (62798117-62798363) | |
| 577-754, gnl|loxAfr1|scaffold_16960 (22217-21928) | |
| 577-754, gnl|loxAfr1|scaffold_16960 (22184-21938) | |
| 577-754, gnl|mm7|chr16 (84844679-84844966) | |
| 577-754, gnl|mm7|chr16 (84844711-84844957) | |
| 577-754, gnl|Mm7|chr16 (84844780-84844957) | |
| 577-754, gnl|monDom2|scaffold_29 (7503016-7502723) | |
| 577-754, gnl|monDom2|scaffold_29 (7502986-7502740) | |
| 577-754, gnl|oryCun1|scaffold_87246 (783-501) | |
| 577-754, gnl|oryCun1|scaffold_87246 (757-511) | |
| 577-754, gnl|panTro1|chr22 (26022586-26022874) | |
| 577-754, gnl|panTro1|chr6 (64309973-64310219) | |
| 577-754, gnl|rheMac2|chr3 (20917848-20917561) | |
| 577-754, gnl|rheMac2|chr3 (20917817-20917571) | |
| 577-754, gnl|rn3|chr11 (24334644-24334931) | |
| 577-754, gnl|rn3|chr11 (24334676-24334922) | |
| 577-754, gnl|tetNig1|chr2 (9362731-9362496) | |
| 577-754, gnl|tetNig1|chr2 (9362726-9362501) | |
| 577-754, gnl|xenTro1|scaffold_114 (857978-858269) | |
| 577-754, gnl|xenTro1|scaffold_114 (858014-858260) | |
| 815-954, gnl|bosTau2|chr1 (8021494-8021633) | |
| 815-954, gnl|canFam2|chr31 (24256664-24256749) | |
| 815-954, gnl|danRer3|chrNA (43263873-43263958) | |
| 815-954, gnl|dasNov1|scaffold_128916 (2248-2333) | |
| 815-954, gnl|echTel1|scaffold_286384 (130039-130124) | |
| 815-954, gnl|fr1|chrUn (284707615-284707700) | |
| 815-954, gnl|galGal2|chr1 (96338885-96338970) | |
| 815-954, gnl|hg17|chr21 (26052304-26052389) | |
| 815-954, gnl|loxAfr1|scaffold_16960 (17125-17040) | |
| 815-954, gnl|mm7|chr16 (84851160-84851245) | |
| 815-954, gnl|monDom2|scaffold_29 (7487698-7487613) | |
| 815-954, gnl|oryCun1|scaffold_41512 (960-875) | |
| 815-954, gnl|panTro1|chr22 (26028765-26028850) | |
| 815-954, gnl|rheMac2|chr3 (20911610-20911525) | |
| 815-954, gnl|rn3|chr11 (24341224-24341309) | |
| 815-954, gnl|tetNig1|chr2 (9362303-9362218) | |
| 815-954, gnl|xenTro1|scaffold_114 (859658-859743) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| cbl (0.114797) |