Ss1.1-Ova1-OVRM10202F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCAGGCTGTACAGAGGATGCAAGACACCCAGCGTCGTGCTCTCCTCCTCCGGGCCCA AGCTGGGGTCATACGAAGACAGCAGCGTGTGCTCCAAGATCCGACACAGCGGCTGCAGAA TCAGCTCAAGCGCTTGCAGGACATTGAGAGGAAGGCCAGAGTGGATATAAACTTCGGACC CTTGGCATCAGCAGACCTGGGCCTGGAGCCTATGGTCCTGGGTGATGTCCGAACAGCCTG CAGCCTCCGGACCCAGTTCCTGCAGAAACTCCTGATTCCTCAGGCCAAGCGAGGCAGTGT TCTAACCCCTCAGGATGACCACTTTGGAACTTCCTACCAGCAGTGGCTTAGCTCAGTGGA GACGCTGCTGACAAACCATCCTCCGGGCCACGTCCTGGCTGCCATGGAGCACCTGGCTGC AGAGCGAGAGGCAGAGATCCGATCCCTGTGCAATCTGGATGGGCTCCAAGATACAGAGAT AGCCAGGCCCCAGGCACCAGACCAGTCAGACTCCGGCCAGGCCCTGCCGCCCATGGTGCA TCTCATCCAGGAGGGCTGGCGATCTGTGGGTGTGCTGGTCACCCAGCGGGGCCCCCTCCT GAAAGAGCATCAAATACTGAGCCAGCGCCTCCTGGGCCTGATGGAGCAAGTGGAGAGATG TGCCCTGGGATCCAGCGAGAGGCAGGCATTGGTGCTGGGGCTCCGGGGCTGTGCCCTATG GGCAGAACTCAAGGCCCTGCGTGCTATGAGCCAGGAGCTAGAGGAGGCAGCTGGGCGGCG GCAGCTTCTGCTCCAGGAGCTACAGACCAAACAACAACGGATCCTGCACTGGCGCCAGCT GGTGGAGGAGACACAGGAACAGGTCCGCCTGCTCATCAAGGGCAACTCAGCCAGCAAGAC GCGCCTGTGCCGGAGCCCTGGGGAGGTGCTTGCTTTGGTTCAGCGAAAAGTGGTCCCCAC ATCTGAGGCAGTGGCACCACAGAGCCAGGAGCTGCTTCGGTGTCTGGAGGAGGAAGCCCG GCATCTGCCCCATCTTCTGCTAGGGCCCCTGCTGCGGCACAGCCCTGGAGGGTTGCAGCC CCTGCCTACGGTCCTGCCATCCATCTACCAGCTGCATCCTGCATCCCCTAAGGGCTCCAG CCTCATAGTGCTGAGCCACATGCTGGGGCTGCCCACAGGGAAGGCTCCAGAGCTGCTCCT CCCGAAGGCAGCCTCTCTTCGCCAGGACCTTCTGTTCCTCCAAGACCAGCAAAGTCTTCG GTGCTGGTATCTGCTCCACATGAAGACCAGCCTGCCGCCAGGACCATCCACCCAGGAGCT GCTGCAGATCCAGGCATCCCAGGAAAAGGAGCAGAACGAGAACCTGGGGCAGGCTCTGAG GCGGCTGGAGAACCGGCTGAGACAAACGCTGGAGCGAATCCCCAAGCTGCAGGGCGTTGT GGGGGACTGGTGGGAGCAGCCAGGACAGGCCACCCTTTCTGGGGAGCTCTGCCAAGGCCT GACCCTGCCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCAGGCTGTACAGAGGATGCAAGACACCCAGCGTCGTGCTCTCCTCCTCCGGGCCCA AGCTGGGGTCATACGAAGACAGCAGCGTGTGCTCCAAGATCCGACACAGCGGCTGCAGAA TCAGCTCAAGCGCTTGCAGGACATTGAGAGGAAGGCCAGAGTGGATATAAACTTCGGACC CTTGGCATCAGCAGACCTGGGCCTGGAGCCTATGGTCCTGGGTGATGTCCGAACAGCCTG CAGCCTCCGGACCCAGTTCCTGCAGAAACTCCTGATTCCTCAGGCCAAGCGAGGCAGTGT TCTAACCCCTCAGGATGACCACTTTGGAACTTCCTACCAGCAGTGGCTTAGCTCAGTGGA GACGCTGCTGACAAACCATCCTCCGGGCCACGTCCTGGCTGCCATGGAGCACCTGGCTGC AGAGCGAGAGGCAGAGATCCGATCCCTGTGCAATCTGGATGGGCTCCAAGATACAGAGAT AGCCAGGCCCCAGGCACCAGACCAGTCAGACTCCGGCCAGGCCCTGCCGCCCATGGTGCA TCTCATCCAGGAGGGCTGGCGATCTGTGGGTGTGCTGGTCACCCAGCGGGGCCCCCTCCT GAAAGAGCATCAAATACTGAGCCAGCGCCTCCTGGGCCTGATGGAGCAAGTGGAGAGATG TGCCCTGGGATCCAGCGAGAGGCAGGCATTGGTGCTGGGGCTCCGGGGCTGTGCCCTATG GGCAGAACTCAAGGCCCTGCGTGCTATGAGCCAGGAGCTAGAGGAGGCAGCTGGGCGGCG GCAGCTTCTGCTCCAGGAGCTACAGACCAAACAACAACGGATCCTGCACTGGCGCCAGCT GGTGGAGGAGACACAGGAACAGGTCCGCCTGCTCATCAAGGGCAACTCAGCCAGCAAGAC GCGCCTGTGCCGGAGCCCTGGGGAGGTGCTTGCTTTGGTTCAGCGAAAAGTGGTCCCCAC ATCTGAGGCAGTGGCACCACAGAGCCAGGAGCTGCTTCGGTGTCTGGAGGAGGAAGCCCG GCATCTGCCCCATCTTCTGCTAGGGCCCCTGCTGCGGCACAGCCCTGGAGGGTTGCAGCC CCTGCCTACGGTCCTGCCATCCATCTACCAGCTGCATCCTGCATCCCCTAAGGGCTCCAG CCTCATAGTGCTGAGCCACATGCTGGGGCTGCCCACAGGGAAGGCTCCAGAGCTGCTCCT CCCGAAGGCAGCCTCTCTTCGCCAGGACCTTCTGTTCCTCCAAGACCAGCAAAGTCTTCG GTGCTGGTATCTGCTCCACATGAAGACCAGCCTGCCGCCAGGACCATCCACCCAGGAGCT GCTGCAGATCCAGGCATCCCAGGAAAAGGAGCAGAACGAGAACCTGGGGCAGGCTCTGAG GCGGCTGGAGAACCGGCTGAGACAAACGCTGGAGCGAATCCCCAAGCTGCAGGGCGTTGT GGGGGACTGGTGGGAGCAGCCAGGACAGGCCACCCTTTCTGGGGAGCTCTGCCAAGGCCT GACCCTGCCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 680-774, + strand, RNAz p=0.648757 | |
| 1316-1456, + strand, RNAz p=0.644588 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 680-774, + strand, RNAz p=0.648757 | |
| 1316-1456, + strand, RNAz p=0.644588 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC064390, + | |
| 3' of BC064390, + |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr18 (42236269-42236114) | |
| 1-156, gnl|canFam2|chr1 (119908472-119908243) | |
| 1-156, gnl|dasNov1|scaffold_77252 (6357-6126) | |
| 1-156, gnl|echTel1|scaffold_173391 (2977-3205) | |
| 1-156, gnl|hg17|chr19 (40797959-40798180) | |
| 1-156, gnl|Hg17|chr19 (40797979-40798134) | |
| 1-156, gnl|loxAfr1|scaffold_136931 (529-301) | |
| 1-156, gnl|mm7|chr7 (27603021-27602811) | |
| 1-156, gnl|Mm7|chr7 (27602999-27602844) | |
| 1-156, gnl|monDom2|scaffold_139 (1779867-1780076) | |
| 1-156, gnl|oryCun1|scaffold_176463 (43130-43356) | |
| 1-156, gnl|panTro1|chr20 (37628349-37628570) | |
| 1-156, gnl|rheMac2|chr19 (42103036-42103257) | |
| 1-156, gnl|rn3|chr1 (85793427-85793214) | |
| 360-487, gnl|bosTau2|chr18 (42234070-42233943) | |
| 360-487, gnl|canFam2|chr1 (119906336-119906125) | |
| 360-487, gnl|dasNov1|scaffold_77252 (3805-3585) | |
| 360-487, gnl|hg17|chr19 (40800705-40800917) | |
| 360-487, gnl|Hg17|chr19 (40800811-40800938) | |
| 360-487, gnl|mm7|chr7 (27600711-27600532) | |
| 360-487, gnl|Mm7|chr7 (27600636-27600509) | |
| 360-487, gnl|monDom2|scaffold_139 (1780383-1780568) | |
| 360-487, gnl|oryCun1|scaffold_110231 (382-183) | |
| 360-487, gnl|panTro1|chr20 (37631096-37631308) | |
| 360-487, gnl|rheMac2|chr19 (42105836-42106048) | |
| 360-487, gnl|rn3|chr1 (85790177-85789974) | |
| 680-845, gnl|bosTau2|chr18 (42233233-42233068) | |
| 680-845, gnl|canFam2|chr1 (119905920-119905167) | |
| 680-845, gnl|dasNov1|scaffold_77252 (3379-2721) | |
| 680-845, gnl|hg17|chr19 (40801124-40801815) | |
| 680-845, gnl|Hg17|chr19 (40801627-40801792) | |
| 680-845, gnl|mm7|chr7 (27600369-27599709) | |
| 680-845, gnl|Mm7|chr7 (27599888-27599723) | |
| 680-845, gnl|monDom2|scaffold_139 (1780814-1781423) | |
| 680-845, gnl|panTro1|chr20 (37631515-37632206) | |
| 680-845, gnl|rheMac2|chr19 (42106254-42106958) | |
| 680-845, gnl|rn3|chr1 (85789801-85789121) | |
| 1316-1456, gnl|bosTau2|chr18 (42230398-42230258) | |
| 1316-1456, gnl|canFam2|chr1 (119901405-119901027) | |
| 1316-1456, gnl|echTel1|scaffold_291922 (42958-42568) | |
| 1316-1456, gnl|hg17|chr19 (40805335-40805712) | |
| 1316-1456, gnl|Hg17|chr19 (40805342-40805482) | |
| 1316-1456, gnl|mm7|chr7 (27595532-27595183) | |
| 1316-1456, gnl|Mm7|chr7 (27595523-27595383) | |
| 1316-1456, gnl|monDom2|scaffold_139 (1790117-1790539) | |
| 1316-1456, gnl|oryCun1|scaffold_209022 (41972-41646) | |
| 1316-1456, gnl|panTro1|chr20 (37635720-37636097) | |
| 1316-1456, gnl|rheMac2|chr19 (42110349-42110733) | |
| 1316-1456, gnl|rn3|chr1 (85785220-85784871) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr18 (42236269-42236114) | |
| 1-156, gnl|canFam2|chr1 (119908472-119908243) | |
| 1-156, gnl|dasNov1|scaffold_77252 (6357-6126) | |
| 1-156, gnl|echTel1|scaffold_173391 (2977-3205) | |
| 1-156, gnl|hg17|chr19 (40797959-40798180) | |
| 1-156, gnl|Hg17|chr19 (40797979-40798134) | |
| 1-156, gnl|loxAfr1|scaffold_136931 (529-301) | |
| 1-156, gnl|mm7|chr7 (27603021-27602811) | |
| 1-156, gnl|Mm7|chr7 (27602999-27602844) | |
| 1-156, gnl|monDom2|scaffold_139 (1779867-1780076) | |
| 1-156, gnl|oryCun1|scaffold_176463 (43130-43356) | |
| 1-156, gnl|panTro1|chr20 (37628349-37628570) | |
| 1-156, gnl|rheMac2|chr19 (42103036-42103257) | |
| 1-156, gnl|rn3|chr1 (85793427-85793214) | |
| 360-487, gnl|bosTau2|chr18 (42234070-42233943) | |
| 360-487, gnl|canFam2|chr1 (119906336-119906125) | |
| 360-487, gnl|dasNov1|scaffold_77252 (3805-3585) | |
| 360-487, gnl|hg17|chr19 (40800705-40800917) | |
| 360-487, gnl|Hg17|chr19 (40800811-40800938) | |
| 360-487, gnl|mm7|chr7 (27600711-27600532) | |
| 360-487, gnl|Mm7|chr7 (27600636-27600509) | |
| 360-487, gnl|monDom2|scaffold_139 (1780383-1780568) | |
| 360-487, gnl|oryCun1|scaffold_110231 (382-183) | |
| 360-487, gnl|panTro1|chr20 (37631096-37631308) | |
| 360-487, gnl|rheMac2|chr19 (42105836-42106048) | |
| 360-487, gnl|rn3|chr1 (85790177-85789974) | |
| 680-845, gnl|bosTau2|chr18 (42233233-42233068) | |
| 680-845, gnl|canFam2|chr1 (119905920-119905167) | |
| 680-845, gnl|dasNov1|scaffold_77252 (3379-2721) | |
| 680-845, gnl|hg17|chr19 (40801124-40801815) | |
| 680-845, gnl|Hg17|chr19 (40801627-40801792) | |
| 680-845, gnl|mm7|chr7 (27600369-27599709) | |
| 680-845, gnl|Mm7|chr7 (27599888-27599723) | |
| 680-845, gnl|monDom2|scaffold_139 (1780814-1781423) | |
| 680-845, gnl|panTro1|chr20 (37631515-37632206) | |
| 680-845, gnl|rheMac2|chr19 (42106254-42106958) | |
| 680-845, gnl|rn3|chr1 (85789801-85789121) | |
| 1316-1456, gnl|bosTau2|chr18 (42230398-42230258) | |
| 1316-1456, gnl|canFam2|chr1 (119901405-119901027) | |
| 1316-1456, gnl|echTel1|scaffold_291922 (42958-42568) | |
| 1316-1456, gnl|hg17|chr19 (40805335-40805712) | |
| 1316-1456, gnl|Hg17|chr19 (40805342-40805482) | |
| 1316-1456, gnl|mm7|chr7 (27595532-27595183) | |
| 1316-1456, gnl|Mm7|chr7 (27595523-27595383) | |
| 1316-1456, gnl|monDom2|scaffold_139 (1790117-1790539) | |
| 1316-1456, gnl|oryCun1|scaffold_209022 (41972-41646) | |
| 1316-1456, gnl|panTro1|chr20 (37635720-37636097) | |
| 1316-1456, gnl|rheMac2|chr19 (42110349-42110733) | |
| 1316-1456, gnl|rn3|chr1 (85785220-85784871) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) | |
| cty (0.10408) |