Non-Coding RNA Search

Ss1.1-Ova1-OVRM10203A03.5

Sequence:


               
               GTGGATGGTCTGGAACGTAGGGCTCGCCTCTTGCTGAAGCTTCGCGGCCTCGGAGCCCAG
CATGGCTTCCTCGCGAGCCTCCTCCACGGCAACCAAAACTAAGGCACCTGATGACTTAGT
CGCTCCTGTTGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAAAAGGAGAGGGA
ACGGCTGGCCAAAGGAGAGTCTGGGATTTTGGGAAAAGAAGGACTTAAAGCAGGAATTGA
AGCAGGGAATATTAACATAACCTCTGGAGAAGTGTTTGAAATTGAAGAGCACATCAGTGA
GCGACAGGCCGAAGTGTTAGCTGAATTTGAGAGAAGGAAGCGAGCCCGGCAAATCAATGT
TTCTACAGATGACTCAGAGGTCAAGGCTTGCCTTAGAGCCCTGGGGGAACCCATCACGCT
TTTTGGAGAGGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAAACATCCTCTCAGTGGTCGG
TACTGATGCCTTAAAAAAGACCAAAAAAGATGATGAGAAATCCAAGAAGTCCAAAGAAGA
GTATCAGCAAACCTGGTACCATGAAGGACCAAACAGCCTGAAGGTTGCTAGACTGTGGAT
TGCTAATTATTCACTGCCCAGGGCAATGAAACGCTTGGAAGAGGCCCGTCTTCATAAAGA
GATTCCTGAGACAACTAGAACCTCCCAGATGCAAGAGCTGCACAAGTCTCTCCGGTCTTT
GAATAATTTCTGCAGTCAAATTGGGGATGATCGGCCTATTTCCTACTGTCACTTTAGTCC
CAATTCCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCC
TGATTGCAATCTCCTTCACACTCTTCGAGGTGAGTTAGAATCTTGTCTGAACCTCAGTCT
TTTTCCCAGTTGACCTCTGTCAAGCAGTATGACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGATGGTCTGGAACGTAGGGCTCGCCTCTTGCTGAAGCTTCGCGGCCTCGGAGCCCAG
CATGGCTTCCTCGCGAGCCTCCTCCACGGCAACCAAAACTAAGGCACCTGATGACTTAGT
CGCTCCTGTTGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAAAAGGAGAGGGA
ACGGCTGGCCAAAGGAGAGTCTGGGATTTTGGGAAAAGAAGGACTTAAAGCAGGAATTGA
AGCAGGGAATATTAACATAACCTCTGGAGAAGTGTTTGAAATTGAAGAGCACATCAGTGA
GCGACAGGCCGAAGTGTTAGCTGAATTTGAGAGAAGGAAGCGAGCCCGGCAAATCAATGT
TTCTACAGATGACTCAGAGGTCAAGGCTTGCCTTAGAGCCCTGGGGGAACCCATCACGCT
TTTTGGAGAGGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAAACATCCTCTCAGTGGTCGG
TACTGATGCCTTAAAAAAGACCAAAAAAGATGATGAGAAATCCAAGAAGTCCAAAGAAGA
GTATCAGCAAACCTGGTACCATGAAGGACCAAACAGCCTGAAGGTTGCTAGACTGTGGAT
TGCTAATTATTCACTGCCCAGGGCAATGAAACGCTTGGAAGAGGCCCGTCTTCATAAAGA
GATTCCTGAGACAACTAGAACCTCCCAGATGCAAGAGCTGCACAAGTCTCTCCGGTCTTT
GAATAATTTCTGCAGTCAAATTGGGGATGATCGGCCTATTTCCTACTGTCACTTTAGTCC
CAATTCCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCC
TGATTGCAATCTCCTTCACACTCTTCGAGGTGAGTTAGAATCTTGTCTGAACCTCAGTCT
TTTTCCCAGTTGACCTCTGTCAAGCAGTATGACTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866034|ref|XP_605649.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866034|ref|XP_605649.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               112-870, gnl|bosTau2|chr4 (12970671-12971417)
               

               
               112-870, gnl|Hg17|chr9 (113118406-113128539)
               

               
               112-870, gnl|Mm7|chr4 (61843295-61851542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-870, gnl|bosTau2|chr4 (12970671-12971417)
               

               
               112-870, gnl|Hg17|chr9 (113118406-113128539)
               

               
               112-870, gnl|Mm7|chr4 (61843295-61851542)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.143184)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	112-870, gnl\|bosTau2\|chr4 (12970671-12971417)
	112-870, gnl\|Hg17\|chr9 (113118406-113128539)
	112-870, gnl\|Mm7\|chr4 (61843295-61851542)