Ss1.1-Ova1-OVRM10203A05.5
|
AAAATAGAGGGCGTCGAGGGGATATGCAAAGCGGACCGCCGGTGGCTGTGATTCGAATCT
TTCCTCTGGCTTCGCTACCCAAGCGAGTCTCCGCCCGGGCCTCCACATCTCCAGCCCTCA
CATCACGACCTCTGAGTCCTCCTTGCGCCCCCTCGCCCCAGCGTCCCGAAATCCTCGCGT
CCCAGCCTCCGGACCACCTGGAAGGATGCGCTCTGCGCCGACAGCCAGAGCAGCGCTGGT
GCTGTGCGCCGCCACCGCTGGGCTGCTAAGCGCGCAGGGCAGCCCGGAACCTCCTGAGGC
GCCGCGCTTCGCGTCCTGGGACGAGGTGAATGTGCTGGCGCACGGGCTCCTGCAGCTCGG
CCGCGGGCTGCGGGAGCACGTGGAGCGCACCCGTGGGCAACTAGGAGCGCTGGAACGGCG
TCTGAGCGCGTGCGGGGCCGCCTGCAAAGACCCGGAGGGGTCCGCCGTGCCTCCTCTCAC
CGCGGGGAATCTGGTCCCTTCCCAAAGCGACGCCGCCCCGGAGACCCTCCACAGCTTGCA
GACTCAGCTCAAGGCTCAGAACAGCAAGATTCAGCAACTCTTCCAGAAGGTGGCCCAGCA
GCAGCGGCACCTGGAGAAGCAGCACTTGAGAATCCAGAATTTGCAGGGCCAGCTGGACCA
CTTGGCTCCCATGCACCTGGGCCATGGGGTGGCCAAGGCTGCCAGGAGAAAAAGACTACC
CAAGATGACCCAGCCTGCTGGCCCAGCTCACAATATCAGCCGCCTGCACAGACTGCCCAG
AGACTGCCAAGAGCTGTTTGAAGAGGGAGAGCGGCAAAGTGGATTGTTCCAGATCCAGCC
CCAGGGGTCCCCGCCATTCCTGGTTAACTGCAAGATGACCTCAGATGGAGGCTGGACTGT
AATTCAGAGGCGCCAGGATGGCTCGGTGGACTTTAACCAGCCTTGGGAAGCCTACAAGGA
TGGCTTCGGAGATCCCAAAGGTGAATTCTGGCTGGGCCTGGAGAAGGTGCACCGCATCAT
GGGGGACCGTGGCAGCCGCCTGGCTGTGCAGCTGCAAGACTGGGAGGGCAATGCCGAGTC
CCTGCAGTTCCCCGTCCACCTGGGTGGTGAGGACACTGCCTACAGCCTGCAGCTCACGGC
ACCTGTGGCTAGCAAACTGGGTGCCACCATCGACACACCCAGTGGCCTCTCCCTGCCCTT
CTCCACTTGGGATCAGGACCACGACCTCCGAGGAGACAAGAACTGCGCCAAGATTCTCTC
TGGTGGTTGGTGGTTTGGCACCTGCAGCCACTCCAACCTCAATGGCCAGTACTTCCATTC
CATCCCTCGGCAGCGGGAGCAGCGTAAGAAGGGCATCTTTTGGAAGACCTGGCGGGGCCG
CTATTACCCGCTGCAGGCCACCACCATGCTGATCCAGCCCACAGTAGCCGAGGCAGCCTC
TTAGCCTCCTCGCTGGGGCCTGGTCCCAGGCTCCCAGAGGACACTGACTCTGACTCTGGC
CCAGCATGTGGCCACTCCTTGCCTGGGCAGGGACTCCAGGCAGGAGCCAGCTGGAGCCTC
ATGGACAGCGAAGATGTCCACGACTGGAGAGGCCTTTGATGAGTGGGGGGCTGCAGGAAA
CACCCTCCAGGAAAGATGGAGCTGCAGGGCTACAGGGCACAGACCCTGAAAGCATAGGAT
GGCGAGGCACGGAGGCACACTCTTCACCTGCCTGAGGAGTGGGGGACACAGAGGGACCAC
TCGGGGACAGCCAGGCAGGCCCTCGATGGCAGATTCAGTCACATTGACTGGCTGGGGGAC
CAGGACTTCTGTAGGGCCCAGGCACCCTCAGGGTGCTGTTGTATGTGGGTGCTGTGAGCA
AGCCGGCGCCAATGCCAACGGCATCCGGGGCAAAACTCACAGAATTCTTGGAATAAAAGC
AACCTCAGAACAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAATAGAGGGCGTCGAGGGGATATGCAAAGCGGACCGCCGGTGGCTGTGATTCGAATCT
TTCCTCTGGCTTCGCTACCCAAGCGAGTCTCCGCCCGGGCCTCCACATCTCCAGCCCTCA
CATCACGACCTCTGAGTCCTCCTTGCGCCCCCTCGCCCCAGCGTCCCGAAATCCTCGCGT
CCCAGCCTCCGGACCACCTGGAAGGATGCGCTCTGCGCCGACAGCCAGAGCAGCGCTGGT
GCTGTGCGCCGCCACCGCTGGGCTGCTAAGCGCGCAGGGCAGCCCGGAACCTCCTGAGGC
GCCGCGCTTCGCGTCCTGGGACGAGGTGAATGTGCTGGCGCACGGGCTCCTGCAGCTCGG
CCGCGGGCTGCGGGAGCACGTGGAGCGCACCCGTGGGCAACTAGGAGCGCTGGAACGGCG
TCTGAGCGCGTGCGGGGCCGCCTGCAAAGACCCGGAGGGGTCCGCCGTGCCTCCTCTCAC
CGCGGGGAATCTGGTCCCTTCCCAAAGCGACGCCGCCCCGGAGACCCTCCACAGCTTGCA
GACTCAGCTCAAGGCTCAGAACAGCAAGATTCAGCAACTCTTCCAGAAGGTGGCCCAGCA
GCAGCGGCACCTGGAGAAGCAGCACTTGAGAATCCAGAATTTGCAGGGCCAGCTGGACCA
CTTGGCTCCCATGCACCTGGGCCATGGGGTGGCCAAGGCTGCCAGGAGAAAAAGACTACC
CAAGATGACCCAGCCTGCTGGCCCAGCTCACAATATCAGCCGCCTGCACAGACTGCCCAG
AGACTGCCAAGAGCTGTTTGAAGAGGGAGAGCGGCAAAGTGGATTGTTCCAGATCCAGCC
CCAGGGGTCCCCGCCATTCCTGGTTAACTGCAAGATGACCTCAGATGGAGGCTGGACTGT
AATTCAGAGGCGCCAGGATGGCTCGGTGGACTTTAACCAGCCTTGGGAAGCCTACAAGGA
TGGCTTCGGAGATCCCAAAGGTGAATTCTGGCTGGGCCTGGAGAAGGTGCACCGCATCAT
GGGGGACCGTGGCAGCCGCCTGGCTGTGCAGCTGCAAGACTGGGAGGGCAATGCCGAGTC
CCTGCAGTTCCCCGTCCACCTGGGTGGTGAGGACACTGCCTACAGCCTGCAGCTCACGGC
ACCTGTGGCTAGCAAACTGGGTGCCACCATCGACACACCCAGTGGCCTCTCCCTGCCCTT
CTCCACTTGGGATCAGGACCACGACCTCCGAGGAGACAAGAACTGCGCCAAGATTCTCTC
TGGTGGTTGGTGGTTTGGCACCTGCAGCCACTCCAACCTCAATGGCCAGTACTTCCATTC
CATCCCTCGGCAGCGGGAGCAGCGTAAGAAGGGCATCTTTTGGAAGACCTGGCGGGGCCG
CTATTACCCGCTGCAGGCCACCACCATGCTGATCCAGCCCACAGTAGCCGAGGCAGCCTC
TTAGCCTCCTCGCTGGGGCCTGGTCCCAGGCTCCCAGAGGACACTGACTCTGACTCTGGC
CCAGCATGTGGCCACTCCTTGCCTGGGCAGGGACTCCAGGCAGGAGCCAGCTGGAGCCTC
ATGGACAGCGAAGATGTCCACGACTGGAGAGGCCTTTGATGAGTGGGGGGCTGCAGGAAA
CACCCTCCAGGAAAGATGGAGCTGCAGGGCTACAGGGCACAGACCCTGAAAGCATAGGAT
GGCGAGGCACGGAGGCACACTCTTCACCTGCCTGAGGAGTGGGGGACACAGAGGGACCAC
TCGGGGACAGCCAGGCAGGCCCTCGATGGCAGATTCAGTCACATTGACTGGCTGGGGGAC
CAGGACTTCTGTAGGGCCCAGGCACCCTCAGGGTGCTGTTGTATGTGGGTGCTGTGAGCA
AGCCGGCGCCAATGCCAACGGCATCCGGGGCAAAACTCACAGAATTCTTGGAATAAAAGC
AACCTCAGAACAAAAAAAAAAAAA
|
|
gi|32250725|gb|AAP74568.1| |
Protein identifier
|
gi|32250725|gb|AAP74568.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-541, gnl|bosTau2|chr7 (11968400-11968942) |
|
3-541, gnl|Hg17|chr19 (8335013-8335523) |
| |
|
771-899, gnl|bosTau2|chr7 (11972844-11972971) |
|
771-899, gnl|canFam2|chr20 (55946677-55946836) |
|
771-899, gnl|danRer3|chr19 (49975086-49975211) |
|
771-899, gnl|dasNov1|scaffold_153045 (1411-1576) |
|
771-899, gnl|echTel1|scaffold_162120 (4227-4067) |
|
771-899, gnl|fr1|chrUn (88600878-88601011) |
|
771-899, gnl|galGal2|chr28 (789484-789320) |
|
771-899, gnl|hg17|chr19 (8340060-8340222) |
|
771-899, gnl|Hg17|chr19 (8340103-8340230) |
|
771-899, gnl|loxAfr1|scaffold_86359 (4104-3945) |
|
771-899, gnl|mm7|chr17 (31853369-31853207) |
|
771-899, gnl|Mm7|chr17 (31853324-31853198) |
|
771-899, gnl|monDom2|scaffold_136 (378280-378123) |
|
771-899, gnl|oryCun1|scaffold_67403 (1290-1119) |
|
771-899, gnl|rheMac2|chr19 (8352967-8353129) |
|
771-899, gnl|rn3|chr7 (16264877-16264714) |
|
771-899, gnl|tetNig1|chr1 (14770234-14770093) |
| |
|
1262-1932, gnl|bosTau2|chr7 (11974824-11975482) |
|
1262-1932, gnl|Hg17|chr19 (8344588-8345254) |
|
1262-1932, gnl|Mm7|chr17 (31850408-31849739) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-541, gnl|bosTau2|chr7 (11968400-11968942) |
|
3-541, gnl|Hg17|chr19 (8335013-8335523) |
| |
|
771-899, gnl|bosTau2|chr7 (11972844-11972971) |
|
771-899, gnl|canFam2|chr20 (55946677-55946836) |
|
771-899, gnl|danRer3|chr19 (49975086-49975211) |
|
771-899, gnl|dasNov1|scaffold_153045 (1411-1576) |
|
771-899, gnl|echTel1|scaffold_162120 (4227-4067) |
|
771-899, gnl|fr1|chrUn (88600878-88601011) |
|
771-899, gnl|galGal2|chr28 (789484-789320) |
|
771-899, gnl|hg17|chr19 (8340060-8340222) |
|
771-899, gnl|Hg17|chr19 (8340103-8340230) |
|
771-899, gnl|loxAfr1|scaffold_86359 (4104-3945) |
|
771-899, gnl|mm7|chr17 (31853369-31853207) |
|
771-899, gnl|Mm7|chr17 (31853324-31853198) |
|
771-899, gnl|monDom2|scaffold_136 (378280-378123) |
|
771-899, gnl|oryCun1|scaffold_67403 (1290-1119) |
|
771-899, gnl|rheMac2|chr19 (8352967-8353129) |
|
771-899, gnl|rn3|chr7 (16264877-16264714) |
|
771-899, gnl|tetNig1|chr1 (14770234-14770093) |
| |
|
1262-1932, gnl|bosTau2|chr7 (11974824-11975482) |
|
1262-1932, gnl|Hg17|chr19 (8344588-8345254) |
|
1262-1932, gnl|Mm7|chr17 (31850408-31849739) |
|
cov (0.396458) |
|
fcc (0.39557) |
|
mas (0.210305) |
|
jej (0.197844) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
cli (0.152812) |
|
fat (0.147427) |
|
eep (0.122564) |
|
cly (0.120642) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
cov (0.396458) |
|
fcc (0.39557) |
|
mas (0.210305) |
|
jej (0.197844) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
cli (0.152812) |
|
fat (0.147427) |
|
eep (0.122564) |
|
cly (0.120642) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
