Non-Coding RNA Search

Ss1.1-Ova1-OVRM10203C01.5

Sequence:


               
               AGGTAGCCGTCCGGTTAGAGACTGCGGCGGCGTCTAAGACACAGCAACCTGGTGCCAGTG
TAGCTGGCCAGCTTCTCCATTCGGGCTGCATCCAGAGTTGGGGAAAAAAACCCTAGAATT
CTAGTGACCCACGGGAGGGTGTGGACTCAGATCGCGAACTATGCGGCGCAGACCAAAATA
GCGGAGTCGGAGGGCCACCGGAAGCCCCACCCCTAGGAGGAGTCGCGAAGCCTCGCCTTG
GAGGTAGGAACCAAAAGGGACGGCCCCTGGGGTGGAGCCCGCCGGCCATGGCCGCGCCCC
CGGAGGCTGGTCCCGCAGCCCTGCGCTTCGCAGCCGCAGCCAGCTGGCAAGTTGTGCGCG
GACGGCGCGTGGAGCATTTTCCGCGAGTATTGGAGTTTCTGCGATCCCTGCGCGCTGCTG
CCCCTGGCTTGGTTCGCTACCGGCACCATGAACGCCTGTGTATGGGCCTAAAGGCCAAGC
TGGTGGTGGAGCTGATCCTGCAGGGCCGGCCTTGGGCCCAGGTTCTGAATGCCCTGAATC
ACCACTTCCCAGAGTCTGGACCTGTGGTGCGGGACCCCAAAGCCACAAAGCAGGATCTGA
GGAAAATCTCAGAGGCCCAGGAAACCTTTTGCCAGCAGGTGAAGCAACTAGCAAAGGATT
CTGTTGATTTGGCTTCGAACCTACAGGGACTTGAGCAAGAGTATGGGGAAACTTTCCTGG
CTGCCATGGAAAAGCTGTTTTTTGAATACTTGTGTCAGCTGGAAAAAGCACTGCCTACAC
TGCAGGCACAGCAGCTTCAGGATGTGCTGAATTGGATGCAGCCTGGAGCTTCTGTCACTT
CTTTTGTCCTGAGCCAGTATGTTGTGGACATGGGGTGGCCACCTCCAGAGTGCTCTGCTA
CTGACTCAGCGACCACCTCAGAGCCCATGGGGCAGAGTCCTCCTCAGCAGCCAAGACCAG
CACTCGACAACCCTCTGCCAAAAGCCCAGCCTGGCCCACACCTTCCACAGGGACCAATCT
CAAGGAAGCACCCAGAACCTCTGGCTGGCCACCACTTCAATCTGGCCCCTCTAGGCCGGC
GAAGAATCCAGTCTCGGTGGGCATCCACTAGCGGAGGCCATAAGGAGCGCCCCACAGTTA
TGCTGTTCCCCTTTAGGAATCTGGGTTCACCAACACAAGTCATATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTAGCCGTCCGGTTAGAGACTGCGGCGGCGTCTAAGACACAGCAACCTGGTGCCAGTG
TAGCTGGCCAGCTTCTCCATTCGGGCTGCATCCAGAGTTGGGGAAAAAAACCCTAGAATT
CTAGTGACCCACGGGAGGGTGTGGACTCAGATCGCGAACTATGCGGCGCAGACCAAAATA
GCGGAGTCGGAGGGCCACCGGAAGCCCCACCCCTAGGAGGAGTCGCGAAGCCTCGCCTTG
GAGGTAGGAACCAAAAGGGACGGCCCCTGGGGTGGAGCCCGCCGGCCATGGCCGCGCCCC
CGGAGGCTGGTCCCGCAGCCCTGCGCTTCGCAGCCGCAGCCAGCTGGCAAGTTGTGCGCG
GACGGCGCGTGGAGCATTTTCCGCGAGTATTGGAGTTTCTGCGATCCCTGCGCGCTGCTG
CCCCTGGCTTGGTTCGCTACCGGCACCATGAACGCCTGTGTATGGGCCTAAAGGCCAAGC
TGGTGGTGGAGCTGATCCTGCAGGGCCGGCCTTGGGCCCAGGTTCTGAATGCCCTGAATC
ACCACTTCCCAGAGTCTGGACCTGTGGTGCGGGACCCCAAAGCCACAAAGCAGGATCTGA
GGAAAATCTCAGAGGCCCAGGAAACCTTTTGCCAGCAGGTGAAGCAACTAGCAAAGGATT
CTGTTGATTTGGCTTCGAACCTACAGGGACTTGAGCAAGAGTATGGGGAAACTTTCCTGG
CTGCCATGGAAAAGCTGTTTTTTGAATACTTGTGTCAGCTGGAAAAAGCACTGCCTACAC
TGCAGGCACAGCAGCTTCAGGATGTGCTGAATTGGATGCAGCCTGGAGCTTCTGTCACTT
CTTTTGTCCTGAGCCAGTATGTTGTGGACATGGGGTGGCCACCTCCAGAGTGCTCTGCTA
CTGACTCAGCGACCACCTCAGAGCCCATGGGGCAGAGTCCTCCTCAGCAGCCAAGACCAG
CACTCGACAACCCTCTGCCAAAAGCCCAGCCTGGCCCACACCTTCCACAGGGACCAATCT
CAAGGAAGCACCCAGAACCTCTGGCTGGCCACCACTTCAATCTGGCCCCTCTAGGCCGGC
GAAGAATCCAGTCTCGGTGGGCATCCACTAGCGGAGGCCATAAGGAGCGCCCCACAGTTA
TGCTGTTCCCCTTTAGGAATCTGGGTTCACCAACACAAGTCATATCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q533T8_MUNMU

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q533T8_MUNMU

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               193-310, - strand, RNAz p=0.999487
               

               
               1002-1121, - strand, RNAz p=0.744202

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-310, - strand, RNAz p=0.999487
               

               
               1002-1121, - strand, RNAz p=0.744202

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               1-486, gnl|bosTau2|chr10 (12257128-12257609)
               

               
               1-486, gnl|Hg17|chr14 (23781668-23781180)
               

               
               1-486, gnl|Mm7|chr14 (50549162-50548735)
               


               
               680-797, gnl|bosTau2|chr10 (12258118-12258235)
               

               
               680-797, gnl|canFam2|chr8 (7227838-7228548)
               

               
               680-797, gnl|dasNov1|scaffold_49736 (2351-1600)
               

               
               680-797, gnl|echTel1|scaffold_316077 (104100-104832)
               

               
               680-797, gnl|hg17|chr14 (23779666-23780393)
               

               
               680-797, gnl|Hg17|chr14 (23780364-23780247)
               

               
               680-797, gnl|loxAfr1|scaffold_38354 (1708-977)
               

               
               680-797, gnl|mm7|chr14 (50547562-50548283)
               

               
               680-797, gnl|Mm7|chr14 (50548261-50548144)
               

               
               680-797, gnl|monDom2|scaffold_12 (25531484-25530696)
               

               
               680-797, gnl|oryCun1|scaffold_178102 (120255-121192)
               

               
               680-797, gnl|panTro1|chr15 (22681704-22682434)
               

               
               680-797, gnl|rheMac2|chr7 (87134763-87135493)
               

               
               680-797, gnl|rn3|chr15 (33846147-33846830)
               


               
               883-1188, gnl|bosTau2|chr10 (12258588-12258893)
               

               
               883-1188, gnl|Hg17|chr14 (23779927-23779622)
               

               
               883-1188, gnl|Mm7|chr14 (50547814-50547518)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-486, gnl|bosTau2|chr10 (12257128-12257609)
               

               
               1-486, gnl|Hg17|chr14 (23781668-23781180)
               

               
               1-486, gnl|Mm7|chr14 (50549162-50548735)
               


               
               680-797, gnl|bosTau2|chr10 (12258118-12258235)
               

               
               680-797, gnl|canFam2|chr8 (7227838-7228548)
               

               
               680-797, gnl|dasNov1|scaffold_49736 (2351-1600)
               

               
               680-797, gnl|echTel1|scaffold_316077 (104100-104832)
               

               
               680-797, gnl|hg17|chr14 (23779666-23780393)
               

               
               680-797, gnl|Hg17|chr14 (23780364-23780247)
               

               
               680-797, gnl|loxAfr1|scaffold_38354 (1708-977)
               

               
               680-797, gnl|mm7|chr14 (50547562-50548283)
               

               
               680-797, gnl|Mm7|chr14 (50548261-50548144)
               

               
               680-797, gnl|monDom2|scaffold_12 (25531484-25530696)
               

               
               680-797, gnl|oryCun1|scaffold_178102 (120255-121192)
               

               
               680-797, gnl|panTro1|chr15 (22681704-22682434)
               

               
               680-797, gnl|rheMac2|chr7 (87134763-87135493)
               

               
               680-797, gnl|rn3|chr15 (33846147-33846830)
               


               
               883-1188, gnl|bosTau2|chr10 (12258588-12258893)
               

               
               883-1188, gnl|Hg17|chr14 (23779927-23779622)
               

               
               883-1188, gnl|Mm7|chr14 (50547814-50547518)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               eep (0.122564)

	193-310, - strand, RNAz p=0.999487
	1002-1121, - strand, RNAz p=0.744202

	1-486, gnl\|bosTau2\|chr10 (12257128-12257609)
	1-486, gnl\|Hg17\|chr14 (23781668-23781180)
	1-486, gnl\|Mm7\|chr14 (50549162-50548735)

	680-797, gnl\|bosTau2\|chr10 (12258118-12258235)
	680-797, gnl\|canFam2\|chr8 (7227838-7228548)
	680-797, gnl\|dasNov1\|scaffold_49736 (2351-1600)
	680-797, gnl\|echTel1\|scaffold_316077 (104100-104832)
	680-797, gnl\|hg17\|chr14 (23779666-23780393)
	680-797, gnl\|Hg17\|chr14 (23780364-23780247)
	680-797, gnl\|loxAfr1\|scaffold_38354 (1708-977)
	680-797, gnl\|mm7\|chr14 (50547562-50548283)
	680-797, gnl\|Mm7\|chr14 (50548261-50548144)
	680-797, gnl\|monDom2\|scaffold_12 (25531484-25530696)
	680-797, gnl\|oryCun1\|scaffold_178102 (120255-121192)
	680-797, gnl\|panTro1\|chr15 (22681704-22682434)
	680-797, gnl\|rheMac2\|chr7 (87134763-87135493)
	680-797, gnl\|rn3\|chr15 (33846147-33846830)

	883-1188, gnl\|bosTau2\|chr10 (12258588-12258893)
	883-1188, gnl\|Hg17\|chr14 (23779927-23779622)
	883-1188, gnl\|Mm7\|chr14 (50547814-50547518)