Ss1.1-Ova1-OVRM10203D05.5
|
ACAGCGGAGCCCAGTGGGCACGCGGTTCTGGCGTCCGTTCTGGGACCCCGGCCCAGCGGT
GCTGGGTCTGCAGGTCCGCCCTCCGGCCGAAGCGGTATTGGAGTACCCCGGCTTGGGGAG
CGGACTCTGGCTGCTGTGGAGAAGCGGGGGCCATACATGGTGACGCGCGCGCCTTCCATT
CAGGCCAAGTTGCAGAAACACCGGGACCTGGCCAAGGCAGTTTTGCGGAGAAAGGGCATG
CTGGGTGCCGCGCCGAACCGCCCCGACTCTTCAGGAAAAAGGTCAGTGAAGTTTAACAAG
GGCTATACTGCTCTTAGTCAGAGTCCAGATGAAAACCTGGTGTCCCTTGACTCTGACAGT
GATGGGGAGCTGGAATCCAGATACTCCTCCGGGTATTCCTCTGCAGAGCAGGTGAACCAG
GATGTGAGCCGGCAGCTGCTCCAGGATGGGTATCACCTGGATGAGATTCCAGATGATGAG
GACTTGGACCTTATCCCCCCCAAACCTATGGCCTCTTCAACATGCTCCTGCTGCTGGTGC
TGTCCTGGGAACACCATGCCTGCAGAGTCCACTTGGCCCATCAGGGGTGACAGAGTGTGG
TGGGAACTGTCATCAGCCCCAAAACACTGGAAGCACTGATGCTCTAGGAAAGTCAGTGAC
CTGCAGTTACCCCTCACCTGGTGCTTCTTAGCCAGAGGCCCCCATCTGAGCCATAGGGTA
ATAAGTAGAATTCTGGAGTTTTCCTCTGCTGCTGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACAGCGGAGCCCAGTGGGCACGCGGTTCTGGCGTCCGTTCTGGGACCCCGGCCCAGCGGT
GCTGGGTCTGCAGGTCCGCCCTCCGGCCGAAGCGGTATTGGAGTACCCCGGCTTGGGGAG
CGGACTCTGGCTGCTGTGGAGAAGCGGGGGCCATACATGGTGACGCGCGCGCCTTCCATT
CAGGCCAAGTTGCAGAAACACCGGGACCTGGCCAAGGCAGTTTTGCGGAGAAAGGGCATG
CTGGGTGCCGCGCCGAACCGCCCCGACTCTTCAGGAAAAAGGTCAGTGAAGTTTAACAAG
GGCTATACTGCTCTTAGTCAGAGTCCAGATGAAAACCTGGTGTCCCTTGACTCTGACAGT
GATGGGGAGCTGGAATCCAGATACTCCTCCGGGTATTCCTCTGCAGAGCAGGTGAACCAG
GATGTGAGCCGGCAGCTGCTCCAGGATGGGTATCACCTGGATGAGATTCCAGATGATGAG
GACTTGGACCTTATCCCCCCCAAACCTATGGCCTCTTCAACATGCTCCTGCTGCTGGTGC
TGTCCTGGGAACACCATGCCTGCAGAGTCCACTTGGCCCATCAGGGGTGACAGAGTGTGG
TGGGAACTGTCATCAGCCCCAAAACACTGGAAGCACTGATGCTCTAGGAAAGTCAGTGAC
CTGCAGTTACCCCTCACCTGGTGCTTCTTAGCCAGAGGCCCCCATCTGAGCCATAGGGTA
ATAAGTAGAATTCTGGAGTTTTCCTCTGCTGCTGGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-192, gnl|bosTau2|chr21 (23073976-23073788) |
|
1-192, gnl|Hg17|chr15 (72986188-72985982) |
|
1-192, gnl|Mm7|chr9 (57565293-57565499) |
| |
|
407-549, gnl|bosTau2|chr21 (23070441-23070302) |
|
407-549, gnl|Hg17|chr15 (72982182-72982040) |
|
407-549, gnl|Mm7|chr9 (57568319-57568461) |
| |
|
552-756, gnl|bosTau2|chr21 (23070247-23070041) |
|
552-756, gnl|canFam2|chr30 (40941270-40941452) |
|
552-756, gnl|dasNov1|scaffold_5247 (7275-7093) |
|
552-756, gnl|echTel1|scaffold_320607 (64526-64690) |
|
552-756, gnl|hg17|chr15 (72981755-72981930) |
|
552-756, gnl|Hg17|chr15 (72981985-72981803) |
|
552-756, gnl|mm7|chr9 (57568739-57568572) |
|
552-756, gnl|Mm7|chr9 (57568509-57568697) |
|
552-756, gnl|monDom2|scaffold_41 (2596072-2595871) |
|
552-756, gnl|panTro1|chr16_random (22108973-22109148) |
|
552-756, gnl|rn3|chr16 (17691241-17691393) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-192, gnl|bosTau2|chr21 (23073976-23073788) |
|
1-192, gnl|Hg17|chr15 (72986188-72985982) |
|
1-192, gnl|Mm7|chr9 (57565293-57565499) |
| |
|
407-549, gnl|bosTau2|chr21 (23070441-23070302) |
|
407-549, gnl|Hg17|chr15 (72982182-72982040) |
|
407-549, gnl|Mm7|chr9 (57568319-57568461) |
| |
|
552-756, gnl|bosTau2|chr21 (23070247-23070041) |
|
552-756, gnl|canFam2|chr30 (40941270-40941452) |
|
552-756, gnl|dasNov1|scaffold_5247 (7275-7093) |
|
552-756, gnl|echTel1|scaffold_320607 (64526-64690) |
|
552-756, gnl|hg17|chr15 (72981755-72981930) |
|
552-756, gnl|Hg17|chr15 (72981985-72981803) |
|
552-756, gnl|mm7|chr9 (57568739-57568572) |
|
552-756, gnl|Mm7|chr9 (57568509-57568697) |
|
552-756, gnl|monDom2|scaffold_41 (2596072-2595871) |
|
552-756, gnl|panTro1|chr16_random (22108973-22109148) |
|
552-756, gnl|rn3|chr16 (17691241-17691393) |
|
aor (0.195274) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
aor (0.195274) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
eru (0.120048) |
|
ecc (0.115035) |
