Non-Coding RNA Search

Ss1.1-Ova1-OVRM10204D04.5

Sequence:


               
               CAAGCGGAATTTAAACCCAAAGTGCCAGCAGGATACCAGAAGGATGGGGCCCGCACCTGC
GGGAGCGCAGCATCGCGGAACTGCTGAGGAGCCGGAGATGATGGAGTCAGCTCTCGAAGG
CCCAGTCAAGGAGGGGAAAAGGGATTCCTCAAAGAAGCGTCCAGTGGCTGGGTCTCCAGT
GGGTCTTCTGCAGCCAGTGAAACTCAGCCGGGCAGAACTGTACAAGGAGCCTACCAATGA
GGAGCTGAATCGCCTTCGGGAGACTGAAAGTCTGTTCCATTCCAGCTTGCTCCGATTACA
GGTAGAGGAGCTACTAAAGGAAGTGAGGCTATCAGAGAAGAAGAAGGAGCGGATTGATGC
TTTCCTACGGGAGGTCAACCAGCGAATCATGAGGGTGCCCCCAACCTCTGAGACAGAGCT
GACAGACCAGTCATGGCTCCCGGATGGAGTTCGAGTCCCCCTCCACCAAGTACCCTATAC
TGTGAAGGGCTGCTTCCGCTTCCTGGCTCCAGCCCAGGTCACTGTTGTGGGCAGTTACCT
TCTGGGCACCTGCATCCGGCCAGACATCAATGTGGATATGGCATTGACCATGCCCAGGGA
GATCCTCCAGGACAAGGATGGCTTGAACCAACGCTACTTCCGCAAGCGCGCCCTCTACCT
GGCTCACTTGGCTCACCACCTGGCCCAAGACCCACTCTTTGGCAGCGTTCACTTTTCCTA
CACCAGTGGCTGCCACCTGAAACCCTCACTGCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCGGAATTTAAACCCAAAGTGCCAGCAGGATACCAGAAGGATGGGGCCCGCACCTGC
GGGAGCGCAGCATCGCGGAACTGCTGAGGAGCCGGAGATGATGGAGTCAGCTCTCGAAGG
CCCAGTCAAGGAGGGGAAAAGGGATTCCTCAAAGAAGCGTCCAGTGGCTGGGTCTCCAGT
GGGTCTTCTGCAGCCAGTGAAACTCAGCCGGGCAGAACTGTACAAGGAGCCTACCAATGA
GGAGCTGAATCGCCTTCGGGAGACTGAAAGTCTGTTCCATTCCAGCTTGCTCCGATTACA
GGTAGAGGAGCTACTAAAGGAAGTGAGGCTATCAGAGAAGAAGAAGGAGCGGATTGATGC
TTTCCTACGGGAGGTCAACCAGCGAATCATGAGGGTGCCCCCAACCTCTGAGACAGAGCT
GACAGACCAGTCATGGCTCCCGGATGGAGTTCGAGTCCCCCTCCACCAAGTACCCTATAC
TGTGAAGGGCTGCTTCCGCTTCCTGGCTCCAGCCCAGGTCACTGTTGTGGGCAGTTACCT
TCTGGGCACCTGCATCCGGCCAGACATCAATGTGGATATGGCATTGACCATGCCCAGGGA
GATCCTCCAGGACAAGGATGGCTTGAACCAACGCTACTTCCGCAAGCGCGCCCTCTACCT
GGCTCACTTGGCTCACCACCTGGCCCAAGACCCACTCTTTGGCAGCGTTCACTTTTCCTA
CACCAGTGGCTGCCACCTGAAACCCTCACTGCTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26343229|dbj|BAC35271.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26343229|dbj|BAC35271.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-576, - strand, RNAz p=0.573828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-576, - strand, RNAz p=0.573828

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-304, gnl|bosTau2|chr8 (37968268-37968052)
               

               
               91-304, gnl|Hg17|chr9 (33462417-33462201)
               

               
               91-304, gnl|Mm7|chr4 (41262129-41261919)
               


               
               417-605, gnl|bosTau2|chr8 (37966244-37966054)
               

               
               417-605, gnl|Hg17|chr9 (33460191-33460001)
               

               
               417-605, gnl|Mm7|chr4 (41260768-41260578)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-304, gnl|bosTau2|chr8 (37968268-37968052)
               

               
               91-304, gnl|Hg17|chr9 (33462417-33462201)
               

               
               91-304, gnl|Mm7|chr4 (41262129-41261919)
               


               
               417-605, gnl|bosTau2|chr8 (37966244-37966054)
               

               
               417-605, gnl|Hg17|chr9 (33460191-33460001)
               

               
               417-605, gnl|Mm7|chr4 (41260768-41260578)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.401016)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)

	91-304, gnl\|bosTau2\|chr8 (37968268-37968052)
	91-304, gnl\|Hg17\|chr9 (33462417-33462201)
	91-304, gnl\|Mm7\|chr4 (41262129-41261919)

	417-605, gnl\|bosTau2\|chr8 (37966244-37966054)
	417-605, gnl\|Hg17\|chr9 (33460191-33460001)
	417-605, gnl\|Mm7\|chr4 (41260768-41260578)