Ss1.1-Ova1-OVRM10205B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTGGTTGTCGAGAAACATGGCGTTGCTGGTGCGAGTCCTTAGGAACCGGATTAGCATC TCCCAGTGGGTTCCAGTATGCAGCCGATTGGTACTTGTGTCTCCTACACAGGGACAGTGG AGCAGGTCTCTGTCTGGTACTTCCCAGTGGCCCCAGATGAGCCAGGCCCTAGCATGTGGT GGATCAGAACAGATTCCTGGAGTAGATGTTCAGCTGAGTAGGAAGTATCACACCACAAAT AAGCTTTCTACTACCAAGGACTCCTCACAGCCTGTTGAGGAGAAAGTTGGTGCCTTTACA AAGATAATAGAAGCCATGGGATTCACTGGACCTTTGAAATACAGTAAATGGAAGATTAAG ATTGCGGCCCTGCGCATGTACACTAGCTGTGTGGAGAAAACTGACTTTGAGGAATTCTTT CTAAGGTGTCAGATGCCTGATACATTCAATTCATGGTTTCTTATAACTCTGCTTCATGTC TGGATGTGTCTAGTCCGAATGAAGCAAGAAGGCCGGAGTGGGAAATACATGTGTCGTATC ATAGTTCATTTTATGTGGGAGGATGTTGAACAGCGTGGCAGAATCATGGGGGTTAATTCC CCACAGCCACAGCAACACCAGATC------------------------------------ ------------------------------------------------------------ ------------------------------------------------AATTTTTTAAAA TGGTTTCTTGAATCCATGTGCTTAGGTATTTTTCATCATATCTTTTTAAAACCTCATCCT AGACATCTATTTAATATTAAATAACTCATAAATTTATTATAATTATTTTCTGTTTTTTTA TTGTAATTATTTTGAAAGGATGTTTACTAGCTATCTTTGTTTAACCAATCCTCTTATTAA AGATTCTTGAGTTAATATTATAGTATTGAATAATTAGACAATTATTACATATTTATGTTA ATATATCATTTTTCAATTTATAATCTGTTGTAAACTTTATAAAAATAAAAGTTTATTAAA ATTTGTTTTAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTGGTTGTCGAGAAACATGGCGTTGCTGGTGCGAGTCCTTAGGAACCGGATTAGCATC TCCCAGTGGGTTCCAGTATGCAGCCGATTGGTACTTGTGTCTCCTACACAGGGACAGTGG AGCAGGTCTCTGTCTGGTACTTCCCAGTGGCCCCAGATGAGCCAGGCCCTAGCATGTGGT GGATCAGAACAGATTCCTGGAGTAGATGTTCAGCTGAGTAGGAAGTATCACACCACAAAT AAGCTTTCTACTACCAAGGACTCCTCACAGCCTGTTGAGGAGAAAGTTGGTGCCTTTACA AAGATAATAGAAGCCATGGGATTCACTGGACCTTTGAAATACAGTAAATGGAAGATTAAG ATTGCGGCCCTGCGCATGTACACTAGCTGTGTGGAGAAAACTGACTTTGAGGAATTCTTT CTAAGGTGTCAGATGCCTGATACATTCAATTCATGGTTTCTTATAACTCTGCTTCATGTC TGGATGTGTCTAGTCCGAATGAAGCAAGAAGGCCGGAGTGGGAAATACATGTGTCGTATC ATAGTTCATTTTATGTGGGAGGATGTTGAACAGCGTGGCAGAATCATGGGGGTTAATTCC CCACAGCCACAGCAACACCAGATC------------------------------------ ------------------------------------------------------------ ------------------------------------------------AATTTTTTAAAA TGGTTTCTTGAATCCATGTGCTTAGGTATTTTTCATCATATCTTTTTAAAACCTCATCCT AGACATCTATTTAATATTAAATAACTCATAAATTTATTATAATTATTTTCTGTTTTTTTA TTGTAATTATTTTGAAAGGATGTTTACTAGCTATCTTTGTTTAACCAATCCTCTTATTAA AGATTCTTGAGTTAATATTATAGTATTGAATAATTAGACAATTATTACATATTTATGTTA ATATATCATTTTTCAATTTATAATCTGTTGTAAACTTTATAAAAATAAAAGTTTATTAAA ATTTGTTTTAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 43-147, gnl|bosTau2|chr13 (45640819-45640715) | |
| 43-147, gnl|Hg17|chr20 (33445413-33445309) | |
| 43-147, gnl|Mm7|chr2 (155662585-155662493) | |
| 237-351, gnl|bosTau2|chr13 (45629523-45629410) | |
| 237-351, gnl|Hg17|chr20 (33433248-33433135) | |
| 237-351, gnl|Mm7|chr2 (155651328-155651215) | |
| 482-593, gnl|bosTau2|chr13 (45601087-45600976) | |
| 482-593, gnl|canFam2|chr24 (27299983-27300133) | |
| 482-593, gnl|danRer3|chrNA (98704007-98703858) | |
| 482-593, gnl|dasNov1|scaffold_4625 (45853-45980) | |
| 482-593, gnl|galGal2|chr20 (1178659-1178512) | |
| 482-593, gnl|hg17|chr20 (33398375-33398524) | |
| 482-593, gnl|Hg17|chr20 (33398490-33398379) | |
| 482-593, gnl|loxAfr1|scaffold_11076 (13325-13475) | |
| 482-593, gnl|mm7|chr2 (155627961-155628105) | |
| 482-593, gnl|Mm7|chr2 (155628076-155627965) | |
| 482-593, gnl|monDom2|scaffold_6 (11636951-11636805) | |
| 482-593, gnl|oryCun1|scaffold_134136 (6535-6689) | |
| 482-593, gnl|panTro1|chr21 (35412327-35412476) | |
| 482-593, gnl|rheMac2|chr10 (29197109-29196960) | |
| 482-593, gnl|tetNig1|chrUn_random (84739980-84739857) | |
| 761-938, gnl|bosTau2|chr13 (45620403-45620234) | |
| 761-938, gnl|canFam2|chr24 (27318354-27318633) | |
| 761-938, gnl|dasNov1|scaffold_2576 (68553-68827) | |
| 761-938, gnl|echTel1|scaffold_55190 (645-361) | |
| 761-938, gnl|hg17|chr20 (33422154-33422444) | |
| 761-938, gnl|Hg17|chr20 (33422481-33422305) | |
| 761-938, gnl|loxAfr1|scaffold_24890 (3482-3190) | |
| 761-938, gnl|mm7|chr2 (155646968-155647254) | |
| 761-938, gnl|Mm7|chr2 (155647262-155647114) | |
| 761-938, gnl|panTro1|chr21 (35436168-35436458) | |
| 761-938, gnl|rheMac2|chr10 (29172713-29172428) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-147, gnl|bosTau2|chr13 (45640819-45640715) | |
| 43-147, gnl|Hg17|chr20 (33445413-33445309) | |
| 43-147, gnl|Mm7|chr2 (155662585-155662493) | |
| 237-351, gnl|bosTau2|chr13 (45629523-45629410) | |
| 237-351, gnl|Hg17|chr20 (33433248-33433135) | |
| 237-351, gnl|Mm7|chr2 (155651328-155651215) | |
| 482-593, gnl|bosTau2|chr13 (45601087-45600976) | |
| 482-593, gnl|canFam2|chr24 (27299983-27300133) | |
| 482-593, gnl|danRer3|chrNA (98704007-98703858) | |
| 482-593, gnl|dasNov1|scaffold_4625 (45853-45980) | |
| 482-593, gnl|galGal2|chr20 (1178659-1178512) | |
| 482-593, gnl|hg17|chr20 (33398375-33398524) | |
| 482-593, gnl|Hg17|chr20 (33398490-33398379) | |
| 482-593, gnl|loxAfr1|scaffold_11076 (13325-13475) | |
| 482-593, gnl|mm7|chr2 (155627961-155628105) | |
| 482-593, gnl|Mm7|chr2 (155628076-155627965) | |
| 482-593, gnl|monDom2|scaffold_6 (11636951-11636805) | |
| 482-593, gnl|oryCun1|scaffold_134136 (6535-6689) | |
| 482-593, gnl|panTro1|chr21 (35412327-35412476) | |
| 482-593, gnl|rheMac2|chr10 (29197109-29196960) | |
| 482-593, gnl|tetNig1|chrUn_random (84739980-84739857) | |
| 761-938, gnl|bosTau2|chr13 (45620403-45620234) | |
| 761-938, gnl|canFam2|chr24 (27318354-27318633) | |
| 761-938, gnl|dasNov1|scaffold_2576 (68553-68827) | |
| 761-938, gnl|echTel1|scaffold_55190 (645-361) | |
| 761-938, gnl|hg17|chr20 (33422154-33422444) | |
| 761-938, gnl|Hg17|chr20 (33422481-33422305) | |
| 761-938, gnl|loxAfr1|scaffold_24890 (3482-3190) | |
| 761-938, gnl|mm7|chr2 (155646968-155647254) | |
| 761-938, gnl|Mm7|chr2 (155647262-155647114) | |
| 761-938, gnl|panTro1|chr21 (35436168-35436458) | |
| 761-938, gnl|rheMac2|chr10 (29172713-29172428) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |